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Submitted SNP(ss) Details: ss2982094           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDPROCR-006196
RefSNP(rs#)rs9574
Submitted Batch IDPROCR-AFRICAN-043001
Submitted DateMay 18, 2001
Publication Cited[1] SeattleSNPs. NHLBI Program for Genomic Applications
First entry to dbSNPMay 18 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodMETHOD-D
Ascertainment Samplesize48
PopulationPGA-AFRICAN-PANEL
Allele
Observed AlleleC/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/!a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2982094|allelePos=51|len=101|taxid=9606|alleles='C/G'|mol=Genomic
 GCATCTTCCT GTGCACAGGT GGACGGCGAT GTTAATTACT CTCCAGCCCC
 S
 TCAGAAGGGG CTGGATTGAT GGAGGCTGGC AAGGGAAAGT TTCAGCTCAC

  Submitted Frequency for ss2982094 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA-EUROPEAN-PANEL44G=0.65909100
C=0.34090900
0.449 +/-0.064PROCR-EUROPEAN-043001PGA-UW-FHCRC
PGA-AFRICAN-PANEL48G=0.79166698
C=0.20833300
0.330 +/-0.097PROCR-AFRICAN-043001PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss2982094 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA-AFRICAN-PANEL4848G=0.79166669
C=0.20833333G/G=0.58333331
C/G=0.41666666
Pr(chiSq=0.620,df=1)
=0.439		Genotype
Freq.
PGA-EUROPEAN-PANEL4444G=0.65909094
C=0.34090909C/G=0.50000000
G/G=0.40909091
C/C=0.09090909
Pr(chiSq=0.279,df=1)
=0.655		Genotype
Freq.

  Submitted individual genotype for ss2982094 back to top
There is no individual genotype data for ss2982094.

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