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Submitted SNP(ss) Details: ss35035688           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC14A-001338
RefSNP(rs#)rs28361189
Submitted Batch IDCDC14A-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize146
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035688|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TTTGTGTTAA CCTTCCTCCT TGGACCAGTG GACTCTCCTC TCTCTCCTGT TCCCTCCGCG
 CCCGCCCAGG CTGGCTCAGC GGTCTCGCCC CGCCCCTCCG GGACCGGAGC ACTGTAAAGA
 TTAGGCATCT GTGATGCTTT TGCGCTCACA TTGGCGGCCC AGATGAGAGG GCGTGGAGAA
 CCAGATGGGA AACTTTTTGT CCCGTGAGAA CAAAGTACAA GTTATATCAG AGTCTGGTAT
 GTGTAGAGGA AACCA
 R
 TACATGTACT GTGAGCTAGG AGCTGGTGCT TCTTTTTCAA TTGTATTTTT TATAAAGATG
 CAGACCCCCT CAGTGTTGGG CGTGGGGGGT GGCTGAAATG TTAGCTAGAG GCGAGGCAGG
 GCACGGAGAT CTGAGGTTTT TACGAGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCGCG
 CGCGCGCGCC CTACAAGAGT TTAGAAGAGC ATGGGTGAGT GGGCGAGAAA GAAAGAGAAT
 GAGAGAGAGA GAGAA

  Submitted Frequency for ss35035688 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90146A=0.98630100
G=0.01369900
CDC14A-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035688 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90146146A=0.98630136
G=0.01369863A/A=0.98630136
G/G=0.01369863
Pr(chiSq=71.027,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss35035688 back to top
There is no individual genotype data for ss35035688.

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