NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss35035691           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC14A-003080
RefSNP(rs#)rs28361190
Submitted Batch IDCDC14A-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize164
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035691|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TACTCCACCA TCGCAGGCTT CGGTTTTCGG GACACCCCCA ACCACACCCC CCAAGTCTCT
 CTCCCTTCCT CTTTTTCAAA TCTCCGAAGC TGCGTCGGGA GGCTCACCTC TTTCTTCCCC
 TTCTCGCAGC TGCTGAGGTC TGGAGATTTG GGAACCAAAC TTGCACCTCC AGTTCTGCGG
 GTACCCCCAG CTCCTGCCTA CTCTGCTGGC CTGAAACAAG GGAAATGTGG GTGCTCTGAG
 CCCCGCTGAG TTCCT
 Y
 GGTCAGGTCC TCCTCTTGCC TAACTGTTGT GCTCTTGAGT CTCTAGCTTT CTGGGAGGGA
 TGAGGTTTCT GCAAGAATTC CACGTGTTAA TGGGGTCTTT AAATTGTGAT CCTTCGTATG
 TTACCACCCA CCTTCACTTC CACTTCTCTA CTTCTCATAT GTTTTTTCTG TCTTTTAAAC
 TTGTCTTTCA GATCGGTTAT ATTTTGCTAC TTTAAGGAAT AGACCAAAAA GCACAGTAAA
 TACCCACTAT TTCTC

  Submitted Frequency for ss35035691 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90164C=0.99390203
T=0.00609800
CDC14A-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035691 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90164164C=0.99390244
T=0.00609756C/C=0.98780489
C/T=0.01219512
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss35035691 back to top
There is no individual genotype data for ss35035691.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement