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Submitted SNP(ss) Details: ss35035693           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC14A-003782
RefSNP(rs#)rs7548466
Submitted Batch IDCDC14A-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize154
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035693|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TTGACAGAAT TTGAACCTTT CAACACTTCA GTTCTTTTAG ACATCTATCT GTTTTAGTTC
 TTCCTACCAC CACAACAAAC AGCAACTGGA GATTCCTAAC ATTCCCCAGA GTAGGACCAG
 GGAGACACAC TGTCATTGCC AGACTCAGTA ATTGGCCTGT GAATCAGTCA CTAAGTATTT
 ATGGAGTGGC CATAGGGTAC AGGGCAGTGC ATGTATTACA GGTGCTTGAG CTTTATAGTT
 TACAAGACTT CTGTT
 Y
 TATCTCAGGA TGTTTTTGTT TGTGCAGCTC TTTTTCAGAA AGTGGGACAC ATTAACTGCG
 GGGAGCTGTA TCAGAGTCAC ATTTATGACT AACATTTTAT CTGACATATT ATTGATTCTT
 TTATTTGGGT ACCCCAAACT TTTTGATATT ATTTTCTTTG CTTCTAAGGA AATGATATAG
 CAGTGCTGAT TTATTTTCTT TGATTACTTT GCTTCTGTGG GATTAGGATT TGAGAGTGTA
 AAATAAAAGT AGGGA

  Submitted Frequency for ss35035693 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90154C=0.94805199
T=0.05194800
CDC14A-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035693 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90154154C=0.94805193
T=0.05194805C/C=0.90909094
C/T=0.07792208
T/T=0.01298701
Pr(chiSq=3.360,df=1)
=0.100
Genotype
Freq.
HapMap-CEU120120C=0.99166667
T=0.00833333C/C=0.98333335
C/T=0.01666667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888C=0.92045456
T=0.07954545C/C=0.86363637
C/T=0.11363637
T/T=0.02272727
Pr(chiSq=2.207,df=1)
=0.150
Genotype
Freq.
HapMap-JPT8888C=0.90909094
T=0.09090909C/C=0.84090906
C/T=0.13636364
T/T=0.02272727
Pr(chiSq=1.347,df=1)
=0.251
Genotype
Freq.
HapMap-YRI118118C=0.83898306
T=0.16101696C/C=0.71186441
C/T=0.25423729
T/T=0.03389831
Pr(chiSq=0.205,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss35035693 back to top
There is no individual genotype data for ss35035693.

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