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Submitted SNP(ss) Details: ss35035699           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC14A-014433
RefSNP(rs#)rs12085272
Submitted Batch IDCDC14A-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 7
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035699|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 CCTTCAGTAC TAGCCATTGA ATAATGGAGT TAATTTACAC TGCTTGAGAA TATTTCTGTG
 GGAGTGAATT TTAATTTTCC CAGTGCATTC CTGAAGAAGT CTCCTTTTGT TTTCGTTAAT
 CTGAGTCTCT AAGGGAGTTT TTATTAACTG ACCTTCTCTA ACGAGGGATG TTAGAATTAC
 AGACCCTGAT ACTGGAAGGT TTCTTGATAC CATCTGGTCT GTTGTTTGGC TTTAAGGCAA
 AGTGAAAGCA CTCAC
 Y
 TATTTTACAG AAACAGCAGC TGACACCTGA CCTGACCAGT ATTTACCTCG GGTTAAGAAG
 GTAATAAGTG GAGAATGGTT CCTCACCCTC TGGTGTTGTA AACCTGAACT TTCTTAGAAA
 TCTAGACAAT GCATCAAGGG ACAGGATTGA TAGTTGATAT TGGGGTTCTC TCCTTCCTTT
 ATGATCTCAA CAAATGTCAG ACTTTTTGCA GACAAGTAAG TAATAAAGAT GATAAGTTTC
 CTAATACATG TAGCT

  Submitted Frequency for ss35035699 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90158T=0.83544302
C=0.16455700
CDC14A-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035699 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90158158T=0.83544302
C=0.16455697T/T=0.72151899
C/T=0.22784810
C/C=0.05063291
Pr(chiSq=2.319,df=1)
=0.150
Genotype
Freq.
HapMap-CEU120120T=0.85833335
C=0.14166667T/T=0.73333335
C/T=0.25000000
C/C=0.01666667
Pr(chiSq=0.047,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090T=0.96666664
C=0.03333334T/T=0.95555556
C/C=0.02222222
C/T=0.02222222
Pr(chiSq=19.316,df=1)
=0.001
Genotype
Freq.
HapMap-JPT9090T=0.96666664
C=0.03333334T/T=0.93333334
C/T=0.06666667
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120C=0.51666665
T=0.48333332C/T=0.43333334
C/C=0.30000001
T/T=0.26666668
Pr(chiSq=1.051,df=1)
=0.317
Genotype
Freq.

  Submitted individual genotype for ss35035699 back to top
There is no individual genotype data for ss35035699.

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