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Submitted SNP(ss) Details: ss35035701           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC14A-014893
RefSNP(rs#)rs28361193
Submitted Batch IDCDC14A-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize132
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035701|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TTTGCAGACA AGTAAGTAAT AAAGATGATA AGTTTCCTAA TACATGTAGC TGCTTTGTAG
 TCTGTGGGTT TGCTTTCTGG CTGTGCAGAA AACAGTGAAT TTCATGGAAA AAGTTGTGTT
 CTTTTCCTTC CTCAAAGAGG AGACACTCTG AGGGAAATGT TTTCTGTACC CAGACCCAAT
 GCACTGAGAG GACAGACAGA ACAGAGAACA TCAAATAGGG CAAGTAGACC TTGAGAAACA
 TTTGAACAGT TGAAT
 R
 GGTTTGTCCA ATAAGGATAA CTAGAGTCAT AGACTCTGTA GAGTCTATAT AGCGGCTAGA
 ACTGTGATAT ATGATATTAC ATAAGAGCTG GAAAGAACTT TAGGAGCCAT CTAATTCAGT
 GGCTTCATTT GATAGATGAG GACGTGGAGT CCCAGAGAGG CTACGACACC AGATTAGGGA
 CACTGAGTGA CCAAATTGGG ACTGGAACCT TTTGGCACCC AGTGATCTTT AGTTCTGCAT
 CAGACTGCTG TGTGT

  Submitted Frequency for ss35035701 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90132G=0.93181801
A=0.06818200
CDC14A-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035701 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90132132G=0.93181819
A=0.06818182G/G=0.87878788
A/G=0.10606061
A/A=0.01515152
Pr(chiSq=1.804,df=1)
=0.200
Genotype
Freq.

  Submitted individual genotype for ss35035701 back to top
There is no individual genotype data for ss35035701.

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