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Submitted SNP(ss) Details: ss35035707           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC14A-026218
RefSNP(rs#)rs28361197
Submitted Batch IDCDC14A-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize148
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035707|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TAATGCCTGA GTGACTGGGA GAAGCAAAGT GTTTTTTTGT CTGGAGGGAT GATGTGAAGG
 AAAGATGGGT TGAGTTTTAG ATATTTTGAG TTCCAGGTGA CGGAAGGGCC TGTAGATGGT
 GGACCCAGCA GGTAGCCGAG ATGGAGAAGA CTGACACTGG CTCTCAAGTG GAAGAGACAT
 CACTTTTCCA TAGGGTCGTC AGTTAAATTC ATGATGTTGG CTAAGAGAGA AGATCTACAG
 ATTGATGACT GTATC
 Y
 TGGAGATGTT AGGGGATGAA GAGAGGGGGA GGAGCCAGTG TGTCTTATAA TACAGAAAGT
 TCATGGAGAA CGAAAACTGA AAAAATACCA CTGGATTTAA GATACTTGAG AATTGTGAGC
 TATGTTTGAG AGGAATAGTT GGAATCCAAA GTACACAAGT AAGATTATGA CTAAAATATA
 TGATAAAGAA ATAAAAGCAA GTAGTACAGG CCATGTACTT GTTATATTCC TGTTGGTTCT
 TTCTTTGCCT GTTCT

  Submitted Frequency for ss35035707 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90148C=0.99324298
T=0.00675700
CDC14A-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035707 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90148148C=0.99324322
T=0.00675676C/C=0.98648649
C/T=0.01351351
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss35035707 back to top
There is no individual genotype data for ss35035707.

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