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Submitted SNP(ss) Details: ss35035713           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC14A-026802
RefSNP(rs#)rs28361202
Submitted Batch IDCDC14A-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize166
PopulationPDR90
Allele
Observed Allele-/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035713|allelePos=256|len=511|taxid=9606|alleles='-/C'|mol=Genomic
 TTTTTTTTTT TTTTGCGATG GAGTTTCACT CTTGTTGCCC AGGCTGGAGT GCAGTGGTGC
 GATCTCTGGC TCACCGCAAC CTCCACCTCC ACCTCCCGGG TTCAAGTGAT TCTCCTGCCT
 CAGCCTCTCG AGTAGCTGGG ATTATAGGCA AGCACCACAC TGCCTGGCTA ATTTTGTATT
 TTTAGTAGAG ATGGGGTTTC TCCATGTTGG TCAGGCTGGT CTCGAACACC TGACCTCAGG
 CAGTCTGCCT GCCCC
 N
 AGCCTCCCAA AGTGCTGGGA TTACAGGCAT AAGCCACCGC GCCCGGCCAC TAGTTCCCTA
 TTAAGAGACT AGTTAGAGTA ACTAGAGGGC ATTAGGACGA AACCATTAGT TATTTGGATT
 ATACCATGGA TCAGATTAGT TATAAGATAA TTGAAATTTG ATTGTAAATT TAATGAAATT
 AAAGATGAAC ATTGATGTTA CTGAAAATTA TACTTTGACT AAATACTACG TTTTTTGTTT
 TTCTTGTATC TTAGT

  Submitted Frequency for ss35035713 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90166-=0.99397600
C=0.00602400
CDC14A-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035713 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90166166-=0.99397588
C=0.00602410-/-=0.98795182
-/C=0.01204819
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss35035713 back to top
There is no individual genotype data for ss35035713.

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