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Submitted SNP(ss) Details: ss35038446           
Submitter
HandleEGP_SNPS
Submitter SNP IDBIRC4-010048
RefSNP(rs#)rs28382708
Submitted Batch IDBIRC4-EGP_YORUB-022405
Submitted DateFeb 28, 2005
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPFeb 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize20
PopulationEGP_YORUB-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35038446|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 AGGCCAGGCA TGGTGGCTCA TGCCTTTAAT CCCAGCACTT TGGGAGGCCA AGTCAGGGAG
 ATCCCTTGAG TCCAGGAGTT CAAGACCAGC CTGGGCAACA TGGTAAAATG CTATCTCTAC
 TAAAAATAGA AAAATTAACT GGGCATGGTT GTGCGTGCAC CTGTAATCCC AGCTACTCTG
 GAGGCTGAGG TGGGAGGATC ACTTGAGCCC AGGAGGTGGA GGTTGCAGTG AGTCAAGATC
 AGGGCACCCC ATTCC
 R
 GCTTGGGGGA CAGAGCAAGA CCCTATCTCA AAAAACAAAA ACAGGAATTT GAGGCCAAAT
 TTATGGATTA TATATTTTAT CTGCTCTGTA TGTGGTTAAT AATAGGTTAT CCTTTATATG
 ATAAAAACAT ACTTATGTCC ATTTTGCAGG ACTTGGCATG GGCTTTTATT GTTTTAAATT
 GTGATACATT TGTAGCTCTG CTGTTTGATA CATTTTGGGA TTTGATTTTG GTATGATTTG
 GTACCCAGTC TTTGT

  Submitted Frequency for ss35038446 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EGP_CEPH-PANEL42A=1.00000000
G=0.00000000
BIRC4-EGP_CEPH-022405EGP_SNPS
EGP_YORUB-PANEL20A=1.00000000
G=0.00000000
BIRC4-EGP_YORUB-022405EGP_SNPS
EGP_HISP-PANEL40A=0.94999999
G=0.05000000
BIRC4-EGP_HISP-022405EGP_SNPS
EGP_ASIAN-PANEL42A=0.97618997
G=0.02381000
BIRC4-EGP_ASIAN-022405EGP_SNPS
EGP_AD-PANEL28A=0.92857099
G=0.07142900
BIRC4-EGP_AD-022405EGP_SNPS


  dbSNP summary of Genotypes for ss35038446 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8686A=0.98837209
G=0.01162791A/A=0.97674417
A/G=0.02325581
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
EGP_YORUB-PANEL2020A=0.80000001
0=0.20000000A/A=0.60000002
0/A=0.40000001
Pr(chiSq=0.225,df=1)
=0.655
Genotype
Freq.
EGP_HISP-PANEL4040A=0.94999999
G=0.05000000A/A=0.94999999
G/G=0.05000000
Pr(chiSq=18.100,df=1)
=0.001
Genotype
Freq.
EGP_CEPH-PANEL4242A=0.83333331
0=0.16666667A/A=0.66666669
0/A=0.33333334
Pr(chiSq=0.257,df=1)
=0.655
Genotype
Freq.
EGP_AD-PANEL2828A=0.57142860
0=0.39285713
G=0.035714290/A=0.71428573
A/A=0.21428572
0/G=0.07142857
Pr(chiSq=3.673,df=2)
=0.200
Genotype
Freq.
EGP_ASIAN-PANEL4242A=0.71428573
0=0.26190478
G=0.023809520/A=0.52380955
A/A=0.42857143
A/G=0.04761905
Pr(chiSq=1.646,df=2)
=0.449
Genotype
Freq.
HAPMAP-CHB8282A=0.98780489
G=0.01219512A/A=0.97560978
A/G=0.02439024
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170A=0.99411762
G=0.00588235A/A=0.98823529
A/G=0.01176471
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss35038446 back to top
There is no individual genotype data for ss35038446.

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