Submitted SNP(ss) Details: ss35039633

Submitted SNP(ss) Details: ss35039633

Submitter
Handle	EGP_SNPS
Submitter SNP ID	XRCC4-001303
RefSNP(rs#)	rs28383111
Submitted Batch ID	XRCC4-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY940097
Submitted Gene Name	XRCC4
Submitted Gene ID	7518
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACATGGCTCC AAGGCCTCTC AGCTCCGGGC CCACACACCC CGGGCTGCCG CACAAACTCC
 AGCCCTAGTC TAGATCCACA ACCCCTTCTC GAAGATCAAC CGCGACCTGG GAGCCCCACT
 TCTTACCATA GCGAGGCCGG CGATGCCGCA GCCACATCAC CCTTCCGGGG CTCAGGCGGA
 AGAGGCTGCA TGTCCCGTCT GCCCTTCTCG CCCTCTCCAG CCGTCCGGTT GGGCTTGTCA
 CGGCACCGCC TACCA
 R
 GACGGGCGGT TAAGACACTA GGATAGGCTC CTCTCCACCG GAAAAGGCGG GATTTAGATC
 ACGTCCCGCA GGCCGGCGGA AGTAGCTGAT ACTCTCATTG GTTGCAAAAC CTTGATCTGT
 GAAAGCGGGC GTTTTGGAAG ATACCGGAAG TAGAGTCACG GAGAGGTAGG ATCCGGAAGT
 GGGGCTGCCT CTTTAAATAA CAAAAATCTG AGGTTCTGTT CTTTTTATCT TTTTGCTTTC
 TTTTTAAAAA AGTTC

Submitted Frequency for ss35039633

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	44	A=1.00000000	G=0.00000000	XRCC4-EGP_HISP-022405	EGP_SNPS
EGP_AD-PANEL	30	A=1.00000000	G=0.00000000	XRCC4-EGP_AD-022405	EGP_SNPS
EGP_CEPH-PANEL	44	A=1.00000000	G=0.00000000	XRCC4-EGP_CEPH-022405	EGP_SNPS
EGP_ASIAN-PANEL	44	A=0.97727299	G=0.02272700	XRCC4-EGP_ASIAN-022405	EGP_SNPS
EGP_YORUB-PANEL	24	A=1.00000000	G=0.00000000	XRCC4-EGP_YORUB-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35039633

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_ASIAN-PANEL	44	44	A=0.97727275	G=0.02272727	A/A=0.95454544 A/G=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35039633

There is no individual genotype data for ss35039633.

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