Submitted SNP(ss) Details: ss35039636

Submitted SNP(ss) Details: ss35039636

Submitter
Handle	EGP_SNPS
Submitter SNP ID	XRCC4-001547
RefSNP(rs#)	rs28383114
Submitted Batch ID	XRCC4-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY940097
Submitted Gene Name	XRCC4
Submitted Gene ID	7518
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACCGCCTACC AAGACGGGCG GTTAAGACAC TAGGATAGGC TCCTCTCCAC CGGAAAAGGC
 GGGATTTAGA TCACGTCCCG CAGGCCGGCG GAAGTAGCTG ATACTCTCAT TGGTTGCAAA
 ACCTTGATCT GTGAAAGCGG GCGTTTTGGA AGATACCGGA AGTAGAGTCA CGGAGAGGTA
 GGATCCGGAA GTGGGGCTGC CTCTTTAAAT AACAAAAATC TGAGGTTCTG TTCTTTTTAT
 CTTTTTGCTT TCTTT
 Y
 TAAAAAAGTT CCCTGCTACT TACCCCTAGA ACTCCACAAT GCGAGAATCC CCCTCAATTT
 GTGAGCTCCC GCGACTTCCT CTTGTGGGCT TTTGGGGATG CTAGGGTTCT CGGCATTATC
 CTCAGGGTGC GACCTGTTCA CCCCCTTTTC AGTTTCTCCG TTTGCATCTG AGGGATTCTT
 GGGAATGCGA AGCACTTTTG AAATGCTCTG TGTTGGTTGT GGGATTGGGA GGACGGTTGA
 ATCCAGAGGG TAGTG

Submitted Frequency for ss35039636

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	44	T=0.97727299	C=0.02272700	XRCC4-EGP_CEPH-022405	EGP_SNPS
EGP_ASIAN-PANEL	44	T=0.93181801	C=0.06818200	XRCC4-EGP_ASIAN-022405	EGP_SNPS
EGP_YORUB-PANEL	24	T=0.87500000	C=0.12500000	XRCC4-EGP_YORUB-022405	EGP_SNPS
EGP_HISP-PANEL	44	T=0.97727299	C=0.02272700	XRCC4-EGP_HISP-022405	EGP_SNPS
EGP_AD-PANEL	30	T=0.93333298	C=0.06666700	XRCC4-EGP_AD-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35039636

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	T=0.87500000	C=0.12500000	T/T=0.75000000 C/T=0.25000000	Pr(chiSq=0.057,df=1) =1.000	Genotype Freq.
EGP_HISP-PANEL	44	44	T=0.97727275	C=0.02272727	T/T=0.95454544 C/T=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
EGP_CEPH-PANEL	44	44	T=0.97727275	C=0.02272727	T/T=0.95454544 C/T=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	30	30	T=0.93333334	C=0.06666667	T/T=0.86666667 C/T=0.13333334	Pr(chiSq=0.010,df=1) =1.000	Genotype Freq.
EGP_ASIAN-PANEL	44	44	T=0.93181819	C=0.06818182	T/T=0.86363637 C/T=0.13636364	Pr(chiSq=0.016,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35039636

There is no individual genotype data for ss35039636.

Disclaimer Privacy statement