Submitted SNP(ss) Details: ss35039637

Submitted SNP(ss) Details: ss35039637

Submitter
Handle	EGP_SNPS
Submitter SNP ID	XRCC4-001648
RefSNP(rs#)	rs28383115
Submitted Batch ID	XRCC4-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY940097
Submitted Gene Name	XRCC4
Submitted Gene ID	7518
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 8
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TACTCTCATT GGTTGCAAAA CCTTGATCTG TGAAAGCGGG CGTTTTGGAA GATACCGGAA
 GTAGAGTCAC GGAGAGGTAG GATCCGGAAG TGGGGCTGCC TCTTTAAATA ACAAAAATCT
 GAGGTTCTGT TCTTTTTATC TTTTTGCTTT CTTTTTAAAA AAGTTCCCTG CTACTTACCC
 CTAGAACTCC ACAATGCGAG AATCCCCCTC AATTTGTGAG CTCCCGCGAC TTCCTCTTGT
 GGGCTTTTGG GGATG
 Y
 TAGGGTTCTC GGCATTATCC TCAGGGTGCG ACCTGTTCAC CCCCTTTTCA GTTTCTCCGT
 TTGCATCTGA GGGATTCTTG GGAATGCGAA GCACTTTTGA AATGCTCTGT GTTGGTTGTG
 GGATTGGGAG GACGGTTGAA TCCAGAGGGT AGTGTTGAGT AGGCTGTTTG AGCATTTCCC
 CAGCACTGGC CTGTCCTTTC AATCCCCAGA TATTGGTAAA CTGTGGGTTC CAACCAGGCA
 TCGAGGCTGA AACGT

Submitted Frequency for ss35039637

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	44	C=1.00000000	T=0.00000000	XRCC4-EGP_CEPH-022405	EGP_SNPS
EGP_HISP-PANEL	44	C=1.00000000	T=0.00000000	XRCC4-EGP_HISP-022405	EGP_SNPS
EGP_AD-PANEL	30	C=0.96666700	T=0.03333300	XRCC4-EGP_AD-022405	EGP_SNPS
EGP_YORUB-PANEL	24	C=1.00000000	T=0.00000000	XRCC4-EGP_YORUB-022405	EGP_SNPS
EGP_ASIAN-PANEL	48	C=1.00000000	T=0.00000000	XRCC4-EGP_ASIAN-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35039637

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-YRI	226	226	C=0.99557525	T=0.00442478	C/C=0.99115044 C/T=0.00884956	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	30	30	C=0.96666664	T=0.03333334	C/C=0.93333334 C/T=0.06666667	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-LWK	180	180	C=0.99444443	T=0.00555556	C/C=0.98888886 C/T=0.01111111	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35039637

There is no individual genotype data for ss35039637.

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