Submitted SNP(ss) Details: ss38337571

Submitted SNP(ss) Details: ss38337571

Submitter
Handle	EGP_SNPS
Submitter SNP ID	GAB1-018138
RefSNP(rs#)	rs17017648
Submitted Batch ID	GAB1-EGP_YORUB-050505
Submitted Date	May 05, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	May 5 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ021880
Submitted Gene Name	GAB1
Submitted Gene ID	2549
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTAAAATCGT ACACTTGGTA TATATCTTGG TGTATCTCCT TTTTATGAGC CTCTGAGTAT
 TCCTAACTTT TTTTCAGATT TTTTTTTCTT CCTTGTTATT TATTCTAACT CATATACTGT
 TTAACATAGT GATGGGTGTT TCCAATGAAT ATTTATATTT TCTGAAAACA AGTGTAAATG
 CTCTTAGAGA GAAGCATAAC ATTAAATAGC TATCCAAATG CAACATTGAG AAATCACTTA
 TAAATTTTCA GTGGG
 R
 GTATTTTAAC TTACAGTTTT CCATTTTGAG TTTAAAGTAT AGAGAAAAAA AGGGTTACAA
 AATATTAGGT AAGCAGATTT ATTGCCCTTT GCCTAAGTTA CTAAAGGGAA GTGTTTCTTT
 TAAAAAAAAC TTAGTGTAGA AGATTTATCA TTAAACTATA ATATACATAT TTGACCTTGT
 AATATTTTTG TTTACTTATA TTTGAATAGA AAATGTGCAT AGATTCACTT AAAATGTGTA
 GTACATTGTT ATTCA

Submitted Frequency for ss38337571

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	44	G=1.00000000	A=0.00000000	GAB1-EGP_CEPH-050505	EGP_SNPS
EGP_AD-PANEL	28	G=0.96428603	A=0.03571400	GAB1-EGP_AD-050505	EGP_SNPS
EGP_ASIAN-PANEL	34	G=1.00000000	A=0.00000000	GAB1-EGP_ASIAN-050505	EGP_SNPS
EGP_YORUB-PANEL	24	G=0.95833302	A=0.04166700	GAB1-EGP_YORUB-050505	EGP_SNPS
EGP_HISP-PANEL	42	G=1.00000000	A=0.00000000	GAB1-EGP_HISP-050505	EGP_SNPS

dbSNP summary of Genotypes for ss38337571

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	G=0.95833331	A=0.04166667	G/G=0.91666669 A/G=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	28	28	G=0.96428573	A=0.03571429	G/G=0.92857140 A/G=0.07142857	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss38337571

There is no individual genotype data for ss38337571.

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