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Submitted SNP(ss) Details: ss38347408           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDMGP-001710
RefSNP(rs#)rs7138866
Submitted Batch IDMGP-PGA_CEPH-061505
Submitted DateJul 07, 2005
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38347408|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CCAGTCTCAT TAGTGGAAAT TGTGATGGTT GAATTTATCA AGGATGAACA TACACGGTCT
 TCTTTCTGAG ATTTTCTTTA AGATTTTCGC ACAGATAATC TATTTCTTAG GTTTTGGAGA
 GAAAACTTGA ATTTTATTGA TCCCTCAGAA CTCAATCTTT CAGATTTCAA AGGAGCTATT
 TCTTTTAATG GGGACTCTGT TAATATTTAT AAAAGCTCTT CACAGGATGG AGGGTGGGAG
 GGAAACTCCA TCCCA
 R
 CAAGACAAAA AGAATGAAGC ATGAGGCTCC ACCTAGTTCA TCACTGCTCC TTGAAATACA
 TCAGTATTGA AAGACACATC CACCCCACCC CCAACCCAGC CCTATTGCTG TTCCAGCTCA
 AGAGTCAGAG GTCCCGAAGC TGTAGCTCTT CTACAATCTG CTGCTCTGTG ACTTCAAGTC
 TGTTGTCTGC AAAGAAAACT ATTGGGTTCC CAAGCAAGAG AGGCACATCT GGTAGGACAG
 ATTTTGTGAT TGCAA

  Submitted Frequency for ss38347408 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PGA_CEPH-PANEL46A=1.00000000
G=0.00000000
MGP-PGA_CEPH-061505PGA-UW-FHCRC
PGA_YORUB-PANEL46A=0.86956501
G=0.13043500
MGP-PGA_YORUB-061505PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss38347408 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PGA_YORUB-PANEL4646A=0.86956519
G=0.13043478A/A=0.78260869
A/G=0.17391305
G/G=0.04347826
Pr(chiSq=1.252,df=1)
=0.273
Genotype
Freq.

  Submitted individual genotype for ss38347408 back to top
There is no individual genotype data for ss38347408.

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