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Submitted SNP(ss) Details: ss38347548           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDAQP3-002487
RefSNP(rs#)rs35141650
Submitted Batch IDAQP3-PGA_CEPH-060305
Submitted DateJul 07, 2005
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38347548|allelePos=256|len=511|taxid=9606|alleles='A/T'|mol=Genomic
 GTCTGTGTGC CCACCTGAGT CTGGACTGCT GCCCCTCTGA CACTAGCTGT CCCCTTGAAG
 GGTCGGTGCC TTATCTGTCC TGACAGAAGA GACAGTGTTG CTTCTCACTT GGGGCTCGCA
 GCCTCCTCCT CCTGCCTCGA ACTGAGGATC TGTTGGGTCC AGTCATCCTG GAGAGATGCG
 GCCAGTTTCT TTCTGACAGG TCTCCTCCTG CCCGCAAGGA AGTGGGGTGA TCACAGGGCG
 CAGGTGGTCT CTATG
 W
 CAGCTGCATC CTCTCCAGCC ATGGCCCTGA ACCCTGCCTA TAATCCCACC ATTGGCTCTC
 AGATCTGCCT AAGCCTCTCA GCCCCCTTGA CGTCCCCTCC CTTAAGCGCC CTCCGAAGGC
 CACCCGTCCC TCAAAGCTCC TCACACTCCA TGCCCGCAGC TCCCTCCACC CGGCGTCCGC
 ACCAGCCTCC CAGCCGAGGT GGGGCGGGGG CGAGGGGGCG CGCACTCCTC GGCGCTCCGG
 GACTGCAGGG CGGGG

  Submitted Frequency for ss38347548 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PGA_YORUB-PANEL48A=0.93750000
T=0.06250000
AQP3-PGA_YORUB-060305PGA-UW-FHCRC
PGA_CEPH-PANEL46A=1.00000000
T=0.00000000
AQP3-PGA_CEPH-060305PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss38347548 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PGA_YORUB-PANEL4848A=0.93750000
T=0.06250000A/A=0.87500000
A/T=0.12500000
Pr(chiSq=0.013,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss38347548 back to top
There is no individual genotype data for ss38347548.

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