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Submitted SNP(ss) Details: ss38348318           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDICAM4-000392
RefSNP(rs#)rs34660244
Submitted Batch IDICAM4-PGA_CEPH-061505
Submitted DateJul 07, 2005
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38348318|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 CCACTTCCTC CCCCAAGAAA ACATTGTGGG TTGATGGCCA TACCCTGAGG TTCTGGTCCA
 AATCGGACTT TCTATGACCT TCTGGGTCTC TAGTGAAAAC TAAAGACTCC TCTCCAGAAA
 AAAACATTTG GTTTCTAATG AGGCCTGGAA TCTTATTCTT GACCTGGGGA GCGGAATCCC
 TTTTTGCAGT ACTCCCGGGC CCTCTGTTGG GGCCTCCCCT TCCTCTCCAG GGTGGAGTCG
 AGGAGGCGGG GCTGC
 S
 GGCCTCCTTA TCTCTAGAGC CGGCCCTGGC TCTCTGGCGC GGGGCCCCTT AGTCCGGGCT
 TTTTGCCATG GGGTCTCTGT TCCCTCTGTC GCTGCTGTTT TTTTTGGCGG CCGCCTACCC
 GGGAGTTGGG AGCGCGCTGG GACGCCGGAC TAAGCGGGCG CAAAGCCCCA AGGGTAGCCC
 TCTCGCGCCC TCCGGGACCT CAGTGCCCTT CTGGGTGCGC ATGAGCCCGG AGTTCGTGGC
 TGTGCAGCCG GGGAA

  Submitted Frequency for ss38348318 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_YORUB-PANEL48G=1.00000000
C=0.00000000
ICAM4-PGA_YORUB-061505PGA-UW-FHCRC
PGA_CEPH-PANEL46G=0.97826099
C=0.02173900
ICAM4-PGA_CEPH-061505PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss38348318 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_CEPH-PANEL4646G=0.97826087
C=0.02173913G/G=0.95652175
C/G=0.04347826
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss38348318 back to top
There is no individual genotype data for ss38348318.

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