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Submitted SNP(ss) Details: ss38348327           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDICAM4-002406
RefSNP(rs#)rs34925519
Submitted Batch IDICAM4-PGA_CEPH-061505
Submitted DateJul 07, 2005
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38348327|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 AGCGGGTGTC ACAGAAACCT CTCCTTCTGC TGGCCTTATC GAGTGGGATC AGCGCGGGCC
 GGGGAGAGCC ACGGGCAGGG GCGGGGTGGG GTTCATGGTA TGGCTTTCCT GATTGGCGCC
 GCCGCCACCA CGCGGCAGCT CTGATTGGAT GTTAAGTTTC CTATCCCAGC CCCACCTTCA
 GACCCTGTGC TTTCCTGGAG GCCAAACAAC TGTGGAGCGA GAACTCATCT CCAAAATAAC
 TTACCACGCT GGAGT
 K
 AGACCACGAA TGGTGGGGAG GGGAGGGTCC CACGGACATA TTGAGGGACG TGGATACGCA
 GAAGAGGTAT CCATGTGGTG GCAGCCGGGA AGGGGTGATC AGATGGTCCA CAGGGAATAT
 CACAAACTCG AATTCTGACG ATGTTCTGGT AGTCACCCAG CCAGATGAGC GCATGGAGTT
 GGGGGTGGGG GGTGTCAAAG CTTGGGGCCC GGAAGCGGAG TCAAAAGCAT CACCCTCGGT
 CCCTTGTTCT CGCGT

  Submitted Frequency for ss38348327 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_YORUB-PANEL48G=0.97916698
T=0.02083300
ICAM4-PGA_YORUB-061505PGA-UW-FHCRC
PGA_CEPH-PANEL46G=1.00000000
T=0.00000000
ICAM4-PGA_CEPH-061505PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss38348327 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_YORUB-PANEL4848G=0.97916669
T=0.02083333G/G=0.95833331
G/T=0.04166667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss38348327 back to top
There is no individual genotype data for ss38348327.

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