NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss38348332           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDICAM4-002796
RefSNP(rs#)rs35099361
Submitted Batch IDICAM4-PGA_CEPH-061505
Submitted DateJul 07, 2005
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38348332|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 CTGACGATGT TCTGGTAGTC ACCCAGCCAG ATGAGCGCAT GGAGTTGGGG GTGGGGGGTG
 TCAAAGCTTG GGGCCCGGAA GCGGAGTCAA AAGCATCACC CTCGGTCCCT TGTTCTCGCG
 TGGATGTCAG GGCCCCCACC CACCGAGCAG AAGGCGGACT CAGGGGCGCT CCAGGGTGGC
 TCGAGCTCAC ACACGCTGAG TAGACACGTG CCCGCTGCAC CCTGGGTAAA TACAGACCCG
 GAGCCGAGCG GATTC
 Y
 AATTTAGACG CCCGCGAACG CTGCGCGCAC GCACACGTGT CCTCGGCTCG CTGGCACTTT
 CGTCCCGCCC CCTCCGTCGC GTGCCGGAGC TGACCCGGAG GGGTGCTTAG AGGTATGGCT
 CCGCGGGGTC AAAAGGAGAA GGATCAGTGA GAGAGGCATC CCCACACCCT CCCCTAGAAC
 TGTCCTTTCC CCATCCAGTG CCTCCCAAAT CTCTCTTAGT CCCCAAATGT ATCCCCGCCC
 TAAGGGGCGC TGGTG

  Submitted Frequency for ss38348332 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PGA_CEPH-PANEL46T=1.00000000
C=0.00000000
ICAM4-PGA_CEPH-061505PGA-UW-FHCRC
PGA_YORUB-PANEL48T=0.95833302
C=0.04166700
ICAM4-PGA_YORUB-061505PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss38348332 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PGA_YORUB-PANEL4848T=0.95833331
C=0.04166667T/T=0.91666669
C/T=0.08333334
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss38348332 back to top
There is no individual genotype data for ss38348332.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement