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Submitted SNP(ss) Details: ss4250730           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDSFTPB-000414
RefSNP(rs#)rs3024791
Submitted Batch IDSFTPB-AFRICAN-103101
Submitted DateNov 06, 2001
Publication Cited[1] SeattleSNPs. NHLBI Program for Genomic Applications
First entry to dbSNPNov 6 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-D
Ascertainment Samplesize42
PopulationPGA-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4250730|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CCATGGGCAG CACCTCCTGT ATAGGGCTGT CTGGGAGCCA CTCCAGGGCC ACAGAAATCT
 TGTCTCTGAC TCAGGGTATT TTGTTTTCTG TTTTGTGTAA ATGCTCTTCT GACTAATGCA
 AACCATGTGT CCATAGAACC AGAAGATTTT TCCAGGGGAA AAGGTAAGGA GGTGGTGAGA
 GTGTCCTGGG TCTGCCCTTC CAGGGCTTGC CCTGGGTTAA GAGCCAGGCA GGAAGCTCTC
 AAGAGCATTG CTCAA
 R
 AGTAGAGGGG GCCTGGGAGG CCCAGGGAGG GGATGGGAGG GGAACACCCA GGCTGCCCCC
 AACCAGATGC CCTCCACCCT CCTCAACCTC CCTCCCACGG CCTGGAGAGG TGGGACCAGG
 TATGGAGGCT TGAGAGCCCC TGGTTGGAGG AAGCCACAAG TCCAGGAACA TGGGAGTCTG
 GGCAGGGGGC AAAGGAGGCA GGAACAGGCC ATCAGCCAGG ACAGGTGGTA AGGCAGGCAG
 GAGTGTTCCT GCTGG

  Submitted Frequency for ss4250730 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA-EUROPEAN-PANEL44G=0.86363602
A=0.13636400
0.236 +/-0.106SFTPB-EUROPEAN-103101PGA-UW-FHCRC
PGA-AFRICAN-PANEL42G=0.80952400
A=0.19047600
0.308 +/-0.106SFTPB-AFRICAN-103101PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss4250730 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA-AFRICAN-PANEL4242G=0.80952382
A=0.19047619G/G=0.61904764
A/G=0.38095239
Pr(chiSq=0.401,df=1)
=0.527		Genotype
Freq.
PGA-EUROPEAN-PANEL4444G=0.86363637
A=0.13636364G/G=0.72727275
A/G=0.27272728
Pr(chiSq=0.139,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss4250730 back to top
There is no individual genotype data for ss4250730.

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