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Submitted SNP(ss) Details: ss44585973           
Submitter
HandleABI
Submitter SNP IDhCV15943976
RefSNP(rs#)rs2925722
Submitted Batch IDxplore_hum_chr5_1
Submitted DateJul 19, 2005
Publication CitedN.D.
First entry to dbSNPJul 19 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44585973|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 GAGGACCCCA CAGTGCCCTG GTCACACTTT GGCTGGGCCA TCTTATTAAA TGGACTAAAT
 CTACTTTTTG CCAGTAGGAT CATAAAGCAG CAGACCTCAG TGATTGATTA AAAGCAGGCT
 GCTGTCCTCA CATCCTGATT TAGGTCTGAT GTCGTTTGAA ATTGAAATTG CTTTCAGAAG
 CTTCTGCAGG TTCTTGAAGG CTAGCTCTCA GAGTCTTAGA AGGTGGTAGG TTACTACCAG
 GTCTAAGCAA GACTGAAAGC CAGAGCTTTG GTGGTTGTCT TCCCTACTGT GGGTTCTTGG
 R
 ACAGGTTGAC TCCAAGGGTC TCCAATCGGC CAAGTGGCCT CTAGAACGTG GAGTCAGGAC
 CTTGCTCAAC AAAGCCCTGG CTGCCCACTG GCATTCCCAT CCCCATCACC TCCTGCCTAC
 CCCTGTAGGC ATAGCTCACA CTGTCACCCA TACTATATCC TCACCTCCAA ATAAATAGCT
 TCACTGAAAA CACAGAAGGG CTTGAATTCC TATCATGATG CTGAGATCTG ACCCTTTAGA
 AATCAGTCGA AGCAATGCAG GAACAGAAAG TGAAGTCCCA GAGAAACGAA TGCAGCCTCA

  Submitted Frequency for ss44585973 back to top
There is no frequency submission for ss44585973.


  dbSNP summary of Genotypes for ss44585973 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118A=0.50000000A/G=0.59322035
A/A=0.20338982
G/G=0.20338982
Pr(chiSq=2.051,df=1)
=0.200
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.53333336
G=0.46666667A/G=0.44444445
A/A=0.31111112
G/G=0.24444444
Pr(chiSq=0.517,df=1)
=0.479
Genotype
Freq.
HapMap-JPT8888A=0.53409094
G=0.46590909A/G=0.70454544
A/A=0.18181819
G/G=0.11363637
Pr(chiSq=7.602,df=1)
=0.010
Genotype
Freq.
HapMap-YRI120120A=0.61666667
G=0.38333333A/G=0.50000000
A/A=0.36666667
G/G=0.13333334
Pr(chiSq=0.199,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss44585973 back to top
There is no individual genotype data for ss44585973.

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