Submitted SNP(ss) Details: ss48400140

Submitted SNP(ss) Details: ss48400140

Submitter
Handle	EGP_SNPS
Submitter SNP ID	OXSR1-001671
RefSNP(rs#)	rs34466698
Submitted Batch ID	OXSR1-EGP_YORUB-091305
Submitted Date	Sep 13, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Sep 13 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ201638
Submitted Gene Name	OXSR1
Submitted Gene ID	9943
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	20
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CTACCCCACC CAGCCGCTCC CTCAGGGTTT CTCCACACCC TGTAGAGCCT TTCGCACGTC
 TCGAGGGTGT GACGGTTACG CCGTGACGTC ACTCCAGAGG AAGTGGTAAG ACGAGCGCGG
 TAACGGAGCT CTTGAAGGGC TGCAGCCCTA ACACGGAGAA GCGCGCTAAG AGCCTGGAGG
 CGGGACCAAT TTATGACTGA CGTCTACCCA CACCCATTGC TTTTCTGATT CCTTCTCAAA
 CAAACCAATG AATGC
 S
 ACGACGGAGA CAGCAGCGTG CCCCAGGCGC TAGAAGTGGC TCTGCCCCTT CTACTTTGCT
 GCCCTTTGGT CGCCATGCTT AGTGTGGCTA CTGCCTCTGT GCTACTTGAG GCTCTCCTAC
 GGCTTTTCGA TGCCTTCGAT GAACCTCTAC CTAAGCACTT CTTCCCTTTC ACCGCGAACT
 CCTACCTTCT CGGGTTTCTA GCTTGCTCAC TTTACATCCA GCCACACTGG AGATGGCGGC
 CGGAGGCGGG CCCGA

Submitted Frequency for ss48400140

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_YORUB-PANEL	20	G=1.00000000	C=0.00000000	OXSR1-EGP_YORUB-091305	EGP_SNPS
EGP_CEPH-PANEL	40	G=0.97500002	C=0.02500000	OXSR1-EGP_CEPH-091305	EGP_SNPS
EGP_HISP-PANEL	40	G=0.92500001	C=0.07500000	OXSR1-EGP_HISP-091305	EGP_SNPS
EGP_ASIAN-PANEL	42	G=1.00000000	C=0.00000000	OXSR1-EGP_ASIAN-091305	EGP_SNPS
EGP_AD-PANEL	24	G=1.00000000	C=0.00000000	OXSR1-EGP_AD-091305	EGP_SNPS

dbSNP summary of Genotypes for ss48400140

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_HISP-PANEL	40	40	G=0.92500001	C=0.07500000	G/G=0.85000002 C/G=0.15000001	Pr(chiSq=0.019,df=1) =1.000	Genotype Freq.
EGP_CEPH-PANEL	40	40	G=0.97500002	C=0.02500000	G/G=0.94999999 C/G=0.05000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss48400140

There is no individual genotype data for ss48400140.

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