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Submitted SNP(ss) Details: ss4916404           
Submitter
HandleEGP_SNPS
Submitter SNP IDPCNA-006018
RefSNP(rs#)rs8632
Submitted Batch IDPCNA-PDR90-071202
Submitted DateJul 12, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 12 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize144
PopulationPDR90
Allele
Observed AlleleT/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4916404|allelePos=256|len=511|taxid=9606|alleles='T/C'|mol=Genomic
 GTAATTAACC ATCTTCCTGT CTTTCAGTTG TAGAGTATAA AATTGCGGAT ATGGGACACT
 TAAAATACTA CTTGGCTCCC AAGATCGAGG ATGAAGAAGG ATCTTAGGCA TTCTTAAAAT
 TCAAGAAAAT AAAACTAAGC TCTTTGAGAA CTGCTTCTAA GATGCCAGCA TATACTGAAG
 TCTTTTCTGT CACCAAATTT GTACCTCTAA GTACATATGT AGATATTGTT TTCTGTAAAT
 AACCTATTTT TTTCT
 Y
 TATTCTCTGC AATTTGTTTA AAGAATAAAG TCCAAAGTCA GATCTGGTCT AGTTAACCTA
 GAAGTATTTT TGTCTCTTAG AAATACTTGT GATTTTTATA ATACAAAAGG GTCTTGACTC
 TAAATGCAGT TTTAAGAATT GTTTTTGAAT TTAAATAAAG TTACTTGAAT TTCAAACATC
 ACAGGGCAGT GTCTTCATTT TGACCAGGAC TGTTGGAAGT ATCCTACTGA ATTCCCAGCT
 ACAGCTACCC TTTCG

  Submitted Frequency for ss4916404 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184C=1.00000000
T=0.00000000
1_2004SEQUENOM
PDR90144C=0.94444400
T=0.05555600
0.105 +/-0.048PCNA-PDR90-071202EGP_SNPS


  dbSNP summary of Genotypes for ss4916404 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90144144C=0.94444442
T=0.05555556C/C=0.90277779
C/T=0.08333334
T/T=0.01388889
Pr(chiSq=3.052,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss4916404 back to top
There is no individual genotype data for ss4916404.

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