Submitted SNP(ss) Details: ss49846514

Submitted SNP(ss) Details: ss49846514

Submitter
Handle	EGP_SNPS
Submitter SNP ID	ANAPC10-019395
RefSNP(rs#)	rs34196072
Submitted Batch ID	ANAPC10-EGP_YORUB-112805
Submitted Date	Nov 30, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Nov 30 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ304649
Submitted Gene Name	ANAPC10
Submitted Gene ID	10393
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATAGTTGGAA ACCAGTTAAC TCAGCTATCT TGTTCCATTT ATACCATCTT TTTTTTTTTT
 TTTTTTTTTG AGATGGAGTT TTGCTCTTGT TGCCCGGGCT GGAGTGCAGT GGCGTGATCT
 CGGGTTACTG CAACCTCCGC CTCCCAGGTT CAAGCGATTC TCCTGCCTCA GCCTTCCGAG
 TAACTGGGAT TACAGGCATG CGCCACCACG CCCGGCTAAT TTTGTATTTT TAGTAGAGAT
 GGGGTTTCTC CATGT
 K
 GGTCAGGCTG GTCTGGAACT CCTGACCTTG TGATTCAACC CGCCTCGGCC TCCCAAAGTG
 CTGGGATTAC AGGCGTGAGC CACTGTACCT GGCCTATACC ATCTATTTTA ACATTCTATA
 GCATTGTATT TTTAGTTGTT TGCTTTTATT GTCCTAGAGT ACAAATCAGC AAATTTCCAA
 CAAGCCAGAT AGTGAATATT TTAGACTTTG TGGGCCATCT CATCTGTTTT GCAGCTACAG
 TGCTCAGTTC CACTG

Submitted Frequency for ss49846514

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	40	T=0.64999998	G=0.34999999	ANAPC10-EGP_HISP-112805	EGP_SNPS
EGP_ASIAN-PANEL	44	T=0.63636398	G=0.36363599	ANAPC10-EGP_ASIAN-112805	EGP_SNPS
EGP_YORUB-PANEL	24	G=0.58333302	T=0.41666701	ANAPC10-EGP_YORUB-112805	EGP_SNPS
EGP_CEPH-PANEL	42	T=0.90476203	G=0.09523800	ANAPC10-EGP_CEPH-112805	EGP_SNPS
EGP_AD-PANEL	30	T=0.56666702	G=0.43333301	ANAPC10-EGP_AD-112805	EGP_SNPS

dbSNP summary of Genotypes for ss49846514

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	G=0.58333331	T=0.41666666	G/G=0.41666666 G/T=0.33333334 T/T=0.25000000	Pr(chiSq=1.185,df=1) =0.294	Genotype Freq.
EGP_HISP-PANEL	40	40	T=0.64999998	G=0.34999999	G/T=0.50000000 T/T=0.40000001 G/G=0.10000000	Pr(chiSq=0.196,df=1) =0.752	Genotype Freq.
EGP_CEPH-PANEL	42	42	T=0.90476191	G=0.09523810	T/T=0.80952382 G/T=0.19047619	Pr(chiSq=0.042,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	30	30	T=0.56666666	G=0.43333334	G/T=0.46666667 T/T=0.33333334 G/G=0.20000000	Pr(chiSq=0.037,df=1) =1.000	Genotype Freq.
EGP_ASIAN-PANEL	44	44	T=0.63636363	G=0.36363637	T/T=0.45454547 G/T=0.36363637 G/G=0.18181819	Pr(chiSq=1.010,df=1) =0.317	Genotype Freq.

Submitted individual genotype for ss49846514

There is no individual genotype data for ss49846514.

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