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Submitted SNP(ss) Details: ss49854085           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDADRA2A-010802
RefSNP(rs#)rs35941526
Submitted Batch IDADRA2A-PGA_CEPH-010606
Submitted DateJan 06, 2006
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJan 6 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize42
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss49854085|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TAGGCCCAAG TCAGACCTCA GCTTTCATCC AACCTCATCT TGGGGATGGC ATGACAAGGT
 CCTGTCCCCA TTTGGGGACA CCTGTAAGGA AGTCTACGTC CTTGACTCAG TAGCATAATA
 GGATCCAGGT ACCGAGGTCC AGAGCCCAGT GCCAGGTTAG CCCTTTGGCC TCTGCCCTGG
 GCCCTGCCAC CCCTCACAGT GGGCCTGAGA GTCCAGGGTG CAGGAAGGGG CACCTTCCTT
 AGCAGAGGGC ACGCG
 Y
 GAAAGGGAGG CCACGTCAAG TCACGGAGCA AAATCACTAA CACTCAGATT TGTTTTGGAA
 ATAGCATTGA TCTATTTGAT TACCAGAAAT CCTGGGGCTT AGAGTTAGTT AAATACAAAA
 AAAATAGAAC AGGGTCTGTT GGAAATAGCC TAGACTGAGG ATTAGGAGGC CTGCGTTCTA
 GGCCCAGTTT TGTCTTTTAC CAGCGATGTG GTCTTGAGCA AATCCCTCTC TGAGTCCCTG
 CTTCTTCATT TATGA

  Submitted Frequency for ss49854085 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_CEPH-PANEL42C=1.00000000
T=0.00000000
ADRA2A-PGA_CEPH-010606PGA-UW-FHCRC
PGA_YORUB-PANEL46C=0.97826099
T=0.02173900
ADRA2A-PGA_YORUB-010606PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss49854085 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_YORUB-PANEL4646C=0.97826087
T=0.02173913C/C=0.95652175
C/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss49854085 back to top
There is no individual genotype data for ss49854085.

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