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Submitted SNP(ss) Details: ss50402880           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDC42BPB-010054
RefSNP(rs#)rs35309755
Submitted Batch IDCDC42BPB-EGP_HISP-020906
Submitted DateFeb 09, 2006
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPFeb 9 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize28
PopulationEGP_HISP-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 4
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss50402880|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CATGTTGGCC AGGCTGATCT TGAACTCCTG ACCTCAAGCA GTCCGCCCGC ATTGGCCTCC
 TGAAGTGCTA GGATTACAGG AGTGAGCCAC CGCTCCCGGC CGAATTTTCT TTAGCTTGGT
 TTTCAATGTA CAGTCATGAA TTTAGTGCCA GGCTTTTAAC TAGAACTCCT CCATTAAACA
 CCTCACATAA TCTTATCACC TTCATCCCTT CCAGGCCTGC CACTTTTCTG TTTCAGCCTG
 GGCCGGGTGT CCTGC
 R
 GGCCTGCTAC TGAGCAGTCC TCCTTGGAGT GCTTTTCATT CCTTGCAGGG ATTCTTCGTG
 TCTCTTTCCT CTGTTGAATT CCCCTTTCTG GATTCTGTGT CTTTCATCTT TTGGTGGAGT
 GAATCTTCTA GTAGCTTCCT GAGAAAGAAT TCATCGGAGG TGAATTTTTT GAACCAGGTC
 TGTCTGAAAA TGCTTTTTTT TTTGGACACA GAGTCTTGCT CTGTTGCCCA GGCTGGAGTG
 CAGTGGTGCA ATCTT

  Submitted Frequency for ss50402880 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
EGP_CEPH-PANEL24G=1.00000000
A=0.00000000
CDC42BPB-EGP_CEPH-020906EGP_SNPS
EGP_ASIAN-PANEL30G=0.96666700
A=0.03333300
CDC42BPB-EGP_ASIAN-020906EGP_SNPS
EGP_HISP-PANEL28G=1.00000000
A=0.00000000
CDC42BPB-EGP_HISP-020906EGP_SNPS
EGP_AD-PANEL26G=1.00000000
A=0.00000000
CDC42BPB-EGP_AD-020906EGP_SNPS


  dbSNP summary of Genotypes for ss50402880 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
EGP_ASIAN-PANEL3030G=0.96666664
A=0.03333334G/G=0.93333334
A/G=0.06666667
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss50402880 back to top
There is no individual genotype data for ss50402880.

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