Submitted SNP(ss) Details: ss52086293

Submitted SNP(ss) Details: ss52086293

Submitter
Handle	PGA-UW-FHCRC
Submitter SNP ID	CD9_000644
RefSNP(rs#)	rs11568191
Submitted Batch ID	CD9-YRI-021307
Submitted Date	Mar 22, 2007
Publication Cited	[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNP	Apr 28 2006 12:00:00:000AM

Resource Links
GenBank Accession	AY422198
Submitted Gene Name	CD9
Submitted Gene ID	928
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-GENO-ILLUMINA
Ascertainment Samplesize	120
Population	YRI_GENO_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 6
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AACAAGGACT AATCCATGTT TTTCAGCTCC TACCCCTAAT GAAATACCCT AATAGATACT
 GAAAAATGTT TTTGAACCAA TGAGACAAGT CTACTGATAA
 Y
 AAACAGGCAA ATAACAGCAA TGTGCTAACA GTGGCTGTTT CTGGTGAGCA GAATTTTGAG
 GTCTGTTCCT TTCACTTCTT GGTATTTCGG TTGTTTCTGT

Submitted Frequency for ss52086293

There is no frequency submission for ss52086293.

dbSNP summary of Genotypes for ss52086293

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
YRI_GENO_PANEL	118	118	T=0.92372882	C=0.07627118	T/T=0.84745765 C/T=0.15254237	Pr(chiSq=0.059,df=1) =1.000	Genotype Freq.
AAM_GENO_PANEL	124	124	T=0.93548387	C=0.06451613	T/T=0.87096775 C/T=0.12903225	Pr(chiSq=0.037,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss52086293

There is no individual genotype data for ss52086293.

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