Submitted SNP(ss) Details: ss5586214

Submitted SNP(ss) Details: ss5586214

Submitter
Handle	SNP500CANCER
Submitter SNP ID	PARP4-10
RefSNP(rs#)	rs4986820
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_009799.11
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	PARP4-10

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: Sequencing Primer F: TATTTCACTTTTCAACCACG, Temp: 45.4, GC Content:35, Product Size: 363 Primer R: ACAGGATACAGTAGAGAAGATTTG, Temp: 46.2, GC Content:37.5

Fasta sequence (Legend)

 ATTTGTATAA AAGAAATAGG AACAAAGCAA AGGTTAGTAC CTAAAATATA AAACCTGTCA
 ATTCAATGGA TATTGGTTTT CTGGTTTAAA TTTCCATTTA GAATTGTTTG AAATAATTTC
 AGATAGAAAT TTAAGAT
 Y
 GTAGASTAAG ACAACTTTCT CTTCATTTTT GCTAGCTTCT CTTTGACTAT GTCTATTGAG
 ATGCCGTATG TGATTGAATT CATTTTCAGT GATACACATG AACTGAAACA AAAGGTTAGT
 GCATCTTTGA TTTCTTAAGA GCTGTTATTT TAACACTACT TTTATCTTAT CAAAGCAATG
 TATGCAC

Submitted Frequency for ss5586214

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
HISP1 - MULTI-NATIONAL	46	C=1.00000000	T=0.00000000		C/C=1.00000000 C/T=0.00000000		08272003	SNP500CANCER
P1 - MULTI-NATIONAL	202	C=0.99000001	T=0.01000000	0.020 +/-0.019	C/C=0.98000002 C/T=0.02000000	0.020	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C=1.00000000	T=0.00000000		C/C=1.00000000 C/T=0.00000000		08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	46	C=1.00000000	T=0.00000000		C/C=1.00000000 C/T=0.00000000		08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C=0.95800000	T=0.04200000	0.080 +/-0.075	C/C=0.91700000 C/T=0.08300000	0.083	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586214

No sufficient data to compute Hardy-weinberg probability for ss5586214.

Submitted individual genotype for ss5586214

There is no individual genotype data for ss5586214.

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