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Submitted SNP(ss) Details: ss5604643           
Submitter
HandleEGP_SNPS
Submitter SNP IDCEP2-001441
RefSNP(rs#)rs4149814
Submitted Batch IDCEP2-PDR90-100702
Submitted DateDec 03, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 3 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5604643|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 GGCTGGGATT TTCGCAGCTT CGCGGGGGTC CCCCGAGAGG CCCATCTCTG TGGCGCCCCG
 CCCCAGCTCG CGCCCTGGCT CTGCCTCTCA CCTCACTCAG TTCCTTTCGA GGGCTCCTAG
 GGCTCCATGG GGCTTCCCAC CCGCATCTGG GTTCCCGCAG CCTCGCCCGT GCCCGCCACG
 GTCCGTGGGG GCGCAACGCA TCCCGACCCC GAATTCCCCG TTCTGCCCTC CATTTTGTGT
 CCGGGCCCCC GCCCC
 S
 CTCCCGAGAC CCAGGGGTGC CCCGCCGCCC AGCATCCCCA CCGGGGCTGG GGGCCGTATT
 TTTAGCCGAT AGTGAGTTGT TCTCCTATCT TTAGCTGCGG CCGCGAATGT CCTGAAACGG
 ATCCGGGCTG GGCTGGGCTC CGCCCGGGTA GGAGTGGGGA GGGGTCGGCG CAGGAACCCG
 AGCCGGAGCT AAGGAGCCGG ACCCGTGGGA GGGGCGGGGG CCCGCACGCC CGAGCTCTGG
 CCCTGTGCCG AGCGG

  Submitted Frequency for ss5604643 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90162C=0.98765397
G=0.01234600
0.024 +/-0.024CEP2-PDR90-100702EGP_SNPS


  dbSNP summary of Genotypes for ss5604643 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90162162C=0.98765433
G=0.01234568C/C=0.97530866
C/G=0.02469136
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5604643 back to top
There is no individual genotype data for ss5604643.

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