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Submitted SNP(ss) Details: ss5607008           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDBF-007580
RefSNP(rs#)rs760070
Submitted Batch IDBF-AFRICAN-112102
Submitted DateDec 03, 2002
Publication Cited[1] SeattleSNPs. NHLBI Program for Genomic Applications HL66682
First entry to dbSNPDec 3 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5607008|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGCAAAAGCA GGTACCTGCT CACGCCCGAG ACTTTCACAT CAACCTCTTT CAAGTGCTGC
 CCTGGCTGAA GGAGAAACTC CAAGATGAGG ATTTGGGTTT TCTATAAGGG GTTTCCTGCT
 GGACAGGGGC GTGGGATTGA ATTAAAACAG CTGCGACAAC ACCTGTGTTC CAGATCCTTT
 TGGGGCAAGG GAGTGGGGAA CAGGCACTGG CCATGTTGTT ACACTGAGAT CAAACCTGAC
 AGCCGTTTTT AAAGG
 Y
 TTAACCCCAA TCCCAAGTGC TGAAAAACCA GAGGCTGAGG GAGATGTGTA AGCTTCCACC
 TCAGTGTTTT ACTGAGACCA GCATTGGGGC ATATGAGGCA CAAGGAATCC AGCTCTGTTC
 CCTAGAAGCC ATCCACAAGG TTTTCCTTGT AGACGTCATC ACTGTAGACA ATCTGGGTCC
 TCTTGTCCCG GTGGCAACCC TTAGGGCTGT TCTGGACAGC TAGGGAGGGA GGAGAGGAAC
 AGTTAAGGTC TAAAG

  Submitted Frequency for ss5607008 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA-EUROPEAN-PANEL40T=0.89999998
C=0.10000000
0.180 +/-0.107BF-EUROPEAN-112102PGA-UW-FHCRC
PGA-AFRICAN-PANEL46T=0.73913002
C=0.26087001
0.386 +/-0.088BF-AFRICAN-112102PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss5607008 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA-AFRICAN-PANEL4646T=0.73913044
C=0.26086956T/T=0.56521738
C/T=0.34782609
C/C=0.08695652
Pr(chiSq=0.221,df=1)
=0.655		Genotype
Freq.
PGA-EUROPEAN-PANEL4040T=0.89999998
C=0.10000000T/T=0.80000001
C/T=0.20000000
Pr(chiSq=0.047,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5607008 back to top
There is no individual genotype data for ss5607008.

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