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Submitted SNP(ss) Details: ss5608610           
Submitter
HandleEGP_SNPS
Submitter SNP IDMDM4-009973
RefSNP(rs#)rs4252676
Submitted Batch IDMDM4-PDR90-010603
Submitted DateJan 07, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 7 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5608610|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CATTTGTGTA CGGTGCTCCA TTATATGTGT CATATGTGTC TTTTACTTCT GCTGGTTGCC
 TTTGTGTGAA TGCTAAATAG GGAATTTTCT GCATTAGAAT AGATGTTATA AATTTTTTTT
 TCTATTTAGT TTTACCAACA GACTGCAGTT TCTTCACTAC CAAAATGACA TCATTTTCCA
 CCTCTGCTCA GTGTTCAACA TCTGACAGTG CTTGCAGGAT CTCTCCTGGA CAAATCAATC
 AGGTAAATCA TTTTC
 R
 GTATTTCTAG TTTTTTGGtt tttttttttt ttaattttta aaaaGTTTAG Ctgtctcatg
 actgtaatcc cagcactttg agaagtcaag gcaggaagct tacttgaagc caggtgtttg
 agaccagcct tggcaacata gtgagacctg tatctctaca aaacatttct aaaagaaaaa
 attagctaga tgcagtgggg tgtgccttta gttctagcta cttgggagcc tgaggcggga
 tatcacttga gccca

  Submitted Frequency for ss5608610 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176G=0.99431801
A=0.00568200
0.011 +/-0.016MDM4-PDR90-010603EGP_SNPS


  dbSNP summary of Genotypes for ss5608610 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176G=0.99431819
A=0.00568182G/G=0.98863637
A/G=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5608610 back to top
There is no individual genotype data for ss5608610.

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