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Submitted SNP(ss) Details: ss5608617           
Submitter
HandleEGP_SNPS
Submitter SNP IDMDM4-011267
RefSNP(rs#)rs4252683
Submitted Batch IDMDM4-PDR90-010603
Submitted DateJan 07, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 7 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5608617|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 gagatggggt ttcaccgtgt tagccaggat ggtctcagtc tcctgacctc atgatccatc
 cgccttggcc tcccaaagtg ctgggattac aggcatgagc caccgcgcct ggccAAATTC
 TCAGTTTTAA GAACAGTTGA GAAGTAGAAG CCAGTGAATA TGTAGTTTTG AAATCAGGCC
 TAAGAAAGGA AGTTCTACTC CTGAGGTATC AGAGGGGCAA CTTATACTCT GTTTTAAAGA
 CTGTTAGGTT GAACA
 Y
 CATATTTCCT TTCTTTTGAA GTGTGTTATA AGATAAACAT AAGATGAACC ATGAATTCAT
 TGATCGTAGA GTTAAAATGC AGAGCAAGTA AAGATTAAAA AGACACTGgg cctggcacca
 tagctcacgc ctgcaatccc agtattttgg gaggctgagg tggagggatt gcatgaaccc
 aggattttga gaccagcctg ggcaacatga tgaaaccctg tctctaaaaa aaaaaaaaaa
 aATACAAAAA TTGGG

  Submitted Frequency for ss5608617 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176T=0.99431801
C=0.00568200
0.011 +/-0.016MDM4-PDR90-010603EGP_SNPS


  dbSNP summary of Genotypes for ss5608617 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176T=0.99431819
C=0.00568182T/T=0.98863637
C/T=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5608617 back to top
There is no individual genotype data for ss5608617.

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