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Submitted SNP(ss) Details: ss60197786           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDPRKACB-040926
RefSNP(rs#)rs41300534
Submitted Batch IDPRKACB-PGA_CEPH-061906
Submitted DateJun 19, 2006
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJun 19 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize40
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss60197786|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GTTAGTTAAA TAAAAGGCCT AGATTAAAAC ACAAATCTGA CTCCTACTCA ATTTATTTGC
 TCAATATTAT CAGTATACTC CTAATTTTAT ATATTAATAC CTGGCTGGTA TCTTTAATTA
 CTTTTGTTAT TTATATTTAA CTTCTTGACT TCTGTGACTA TCCTCACATT GACCATTAGA
 CTCCAGCAAG AAAGAATGCC ACCTTCTAAT GATTTACACA TATACAAGAA AATTATTTAT
 ATGTCTTGCT AAAGT
 M
 ACCACTTCTT AAATTCAAAA TAGAATCACA TATGGAATAG AATCACAGTC TTCGTGAAGT
 CAAGATAAAT TACTTTCCCC TTCTATTAAA TAGAAAATCT AGAGGAAGCT TAAGTCTAAA
 TGACCTAGGA TACAAAGATA GTTTTTGTTA TAAAGATAGT TTTTTCCCCA ATATTTTGTG
 TGTCCTCTTC TATGGCAATA TAAAATAAAT TTTTAGAATT TATACCTATA TTTATTTAGA
 TATTATAAAA TGAAA

  Submitted Frequency for ss60197786 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PGA_CEPH-PANEL40C=1.00000000
A=0.00000000
PRKACB-PGA_CEPH-061906PGA-UW-FHCRC
PGA_YORUB-PANEL40C=0.94999999
A=0.05000000
PRKACB-PGA_YORUB-061906PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss60197786 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PGA_YORUB-PANEL4040C=0.94999999
A=0.05000000C/C=0.89999998
A/C=0.10000000
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss60197786 back to top
There is no individual genotype data for ss60197786.

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