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Submitted SNP(ss) Details: ss6310640           
Submitter
HandleEGP_SNPS
Submitter SNP IDFOS-005223
RefSNP(rs#)rs4645866
Submitted Batch IDFOS-PDR90-011303
Submitted DateJan 15, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 15 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize172
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6310640|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 CCTCTTGATA CTTGGTTAAA AAAAATTTTC Aggccgggcg cggtggccca tgcctgtaat
 cctagcactt tgggaggccg aggcaggcgg atcacctgag gtcgggagtt cgagaccagc
 ctgaccaaca tggagaaacc ccgtctttac taaaaataca aaattagcct ggtgtggtgg
 tgcatgcctg taatcctagc tacttgagag gctgagacag gaaaatcact tgaactcggg
 aggcggatgt tgcag
 Y
 gaactgagat tgcgccattg cactccagcc tgggcaacaa gattgaaact ctgtttaaaa
 aaaaaaGTTT TCACTAATGT GTACATTTTT TTGTACTCTT TTATTCTCGA AAGGGAAGGA
 GGGCTATTGC CCTATCCCTT ATTAATAAAT GCATTGTGGT TTCTGGTTTC TCTAATACCA
 TATGCCCTTC ATTCAGTTTA TAGTGGGCGG AAGTGGGGGA GAAAAAGTTG CTCAGAAATC
 AAAAGATATC TCAAA

  Submitted Frequency for ss6310640 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90172C=0.86627901
T=0.13372099
0.232 +/-0.054FOS-PDR90-011303EGP_SNPS


  dbSNP summary of Genotypes for ss6310640 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90172172C=0.86627907
T=0.13372093C/C=0.74418604
C/T=0.24418604
T/T=0.01162791
Pr(chiSq=0.251,df=1)
=0.655		Genotype
Freq.

  Submitted individual genotype for ss6310640 back to top
There is no individual genotype data for ss6310640.

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