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Submitted SNP(ss) Details: ss66861477           
Submitter
HandleEGP_SNPS
Submitter SNP IDALAD_006893
RefSNP(rs#)rs8177819
Submitted Batch IDALAD-HSP-021307
Submitted DateMar 02, 2007
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPNov 9 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-GENO-ILLUMINA
Ascertainment Samplesize120
PopulationHSP_GENO_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss66861477|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 CCATAACTGG ATAACTGGGG ATAAGATACC TGGTGCGTGG TTGTCCTGAG GATTAAATGA
 AGTAATATCA CTCCATAAAG GGGACTCATT TTGTTAGAAT
 Y
 GCACACCAGC ATGGGAAGGA ACTTGCCTCT TACCTATTTC CTTCACTGTG CATTTTATTC
 TTTGGTAAAC TGAGGCCCCA AAAGAGGAAA TGACTTGCCC

  Submitted Frequency for ss66861477 back to top
There is no frequency submission for ss66861477.


  dbSNP summary of Genotypes for ss66861477 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HSP_GENO_PANEL5252T=0.96153843
C=0.03846154T/T=0.92307693
C/T=0.07692308
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
CEU_GENO_PANEL6868T=0.98529410
C=0.01470588T/T=0.97058821
C/T=0.02941176
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
AAM_GENO_PANEL122122T=0.95901638
C=0.04098361T/T=0.91803277
C/T=0.08196721
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.
CHB_GENO_PANEL9090T=0.89999998
C=0.10000000T/T=0.80000001
C/T=0.20000000
Pr(chiSq=0.106,df=1)
=0.752
Genotype
Freq.
YRI_GENO_PANEL120120T=0.94999999
C=0.05000000T/T=0.89999998
C/T=0.10000000
Pr(chiSq=0.016,df=1)
=1.000
Genotype
Freq.
JPT_GENO_PANEL2424T=0.95833331
C=0.04166667T/T=0.91666669
C/T=0.08333334
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss66861477 back to top
There is no individual genotype data for ss66861477.

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