Submitter | Handle | TAPPERS | Submitter SNP ID | CHRNA5X2_Y252_C/T | RefSNP(rs#) | rs569207 | Submitted Batch ID | RDT2007March29 | Submitted Date | Mar 29, 2007 | Publication Cited | N.D. | First entry to dbSNP | Mar 29 2007 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_010194
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | N.D |
| | Allele | Observed Allele | C/T | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | N.D. |
| | Variation | Frequency Submission | population count: 1 | Genotype Summary | N.D. | Genotype Submission | N.D. | Haplotype | N.D. |
|
Comment | Conditions for pyrosequencing are listed below:Forward primer: TACAGGTATCTGGTGGGAGAGAABiotinylated reverse primer: GAACCCATCTTTCGTAGTCTTGASequencing primer: ATCTGGTGGGAGAGAAPCR conditions for pyro sequencing:Template: 4ng genomic DNA in 15uL final reaction volumePrimer: each 0.2uMdNTPs:each 0.125mM;PCR buffer: 1.5ul (10x) AmpliTaq Gold buffer, Mg 2.5mM, Taq Gold Polymerase: 0.02units/ul,5 min 95C denature and 10 min 72C final extension; 50 cycles: 20s at 95C, 30s at 61C, 20s at 72C |
>gnl|dbSNP|ss69371813|allelePos=51|len=101|taxid=9606|alleles='C/T'|mol=Genomic CCTGGGTTTG AACTTTTGTT TGAAAGTACA GGTATCTGGT GGGAGAGAAG
Y
GAGTACATTA ACTTTTAAAA ATTTGTTATA CAGGATTATC TGAACCTTCT
Population ID -Class | Sample (2n) | Major Allele Freq. | Minor Allele Freq. | Estimated Heterozygosity +/-std.err. | Genotype Freq. | Submitted Hetero- zygosity | Submission Batch | Submitter | MOTWINS - NORTH AMERICA | 862 | C=0.77800000
| T=0.22200000
| | | | RDT2007March29 | TAPPERS |
No sufficient data to compute Hardy-weinberg probability for ss69371813.
There is no individual genotype data for ss69371813.
|