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Submitted SNP(ss) Details: ss70352921           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDOTUD4-000579
RefSNP(rs#)rs397767770
Submitted Batch IDOTUD4-PGA_CEPH-080806
Submitted DateApr 18, 2007
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPApr 18 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed Allele-/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss70352921|allelePos=256|len=511|taxid=9606|alleles='-/T'|mol=Genomic
 AGGACTCCGT CTCAAAAAAA AAAAAAGAAA TAGTTGTTTC AATTCACAGC TTTAGAATTT
 TGGTAAAAGA CCACATGCCA GTAAGTTATC TTTTTGTTGA ACTGGTTGTT TAATAGAAGA
 AAATGTAAAC TGCAGAGTGA GAGGATCTGG ATCATACTTT GTAGGTTGGT ACTTTACAAT
 TTAGGGCATA AAAACAAACC CCAAACCTCT TGGGATGATA CCACACAACA TTTTTGCACC
 CCCTATGCTG CCTAC
 N
 TTGGATGTTC TTTCTTGTCT TATAAGCTTG ATCACCAAGG AAAGAATGAG TGCCTTAATT
 TTTCTGAAAC CATAGTGGAC TTAAATTTTT ACACAGAGCC TCTAAGTGGA TTCAGAATTA
 ATGGGAAAAA TAAATCGGCC TCTTACAGGC TGAAAGCCTC AAAATACATT CCTACAGAAG
 TTGCCAGTTT GTCTTTTTCA ATATGTATAG GATGAAGTTG AGCGTGGCGT AGCATGGATT
 TTGTTAGCTC TTCTT

  Submitted Frequency for ss70352921 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_CEPH-PANEL46T=0.54347801
-=0.45652199
OTUD4-PGA_CEPH-080806PGA-UW-FHCRC
PGA_YORUB-PANEL48-=0.58333302
T=0.41666701
OTUD4-PGA_YORUB-080806PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss70352921 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_CEPH-PANEL4646T=0.54347825
-=0.45652175-/T=0.65217394
T/T=0.21739130
-/-=0.13043478
Pr(chiSq=2.272,df=1)
=0.150		Genotype
Freq.
PGA_YORUB-PANEL4848-=0.58333331
T=0.41666666-/T=0.41666666
-/-=0.37500000
T/T=0.20833333
Pr(chiSq=0.490,df=1)
=0.527		Genotype
Freq.

  Submitted individual genotype for ss70352921 back to top
There is no individual genotype data for ss70352921.

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