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Submitted SNP(ss) Details: ss70354358           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDPTGES-000463
RefSNP(rs#)rs34563958
Submitted Batch IDPTGES-PGA_CEPH-041007
Submitted DateApr 18, 2007
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPApr 18 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize42
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss70354358|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TCTGGCTAAT TTTTGTATTT TTAGTAGAGA GGGGATTTCA CCACGTTGGC CAGGCTGGTC
 TCGAACTTCT GACCTCAGAT AATCTGCCCC CCTCGGCCTC CCAAAGTGCT GGGATTACAT
 GTGTGAGCCA CCTGGCCAAG GTGAGGATTT TGAGGTGAGG GATTCAAAGA ATCTTAGAAA
 ACAAACGTTG ATGCTTTCTT TCTTTTTTGA GACAGGGTCT TGCTCTGTCA CCCAGGCTAG
 AGTGCAGTGG TGAGA
 R
 CATGGCTCAC TGCAGCCTCA GCCTCCTGGG TTCAGGTGAT CCTCCCACTT CAGCCTCCTG
 AGTAGCTGGG AATACAGGCG AGCACCACCA TGCCCAGCTA ATTAAAACAT TTTTTTGTAG
 AGACGGAGTC TCCCTATGTT GCCCAGGCTG GTCTTGAACT TCTGACTTCA GGTAATCTGT
 CCCCCTTGGC CTCCCAAGGG GCTGGAATTA CAGGTGTGAG CCACCGCGCC CGGCCTGGTG
 ATGCTTTCTA CTGAA

  Submitted Frequency for ss70354358 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_CEPH-PANEL42A=0.95238101
G=0.04761900
PTGES-PGA_CEPH-041007PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss70354358 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_CEPH-PANEL4242A=0.95238096
G=0.04761905A/A=0.90476191
A/G=0.09523810
Pr(chiSq=0.005,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss70354358 back to top
There is no individual genotype data for ss70354358.

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