Submitted SNP(ss) Details: ss7984993

Submitted SNP(ss) Details: ss7984993

Submitter
Handle	PGA-UW-FHCRC
Submitter SNP ID	KNG-002419
RefSNP(rs#)	rs1836860
Submitted Batch ID	KNG-AFRICAN-030603
Submitted Date	Mar 19, 2003
Publication Cited	[1] SeattleSNPs. NHLBI Program for Genomic Applications HL66682
First entry to dbSNP	Mar 19 2003 12:00:00:000AM

Resource Links
GenBank Accession	AY248697
Submitted Gene Name	KNG
Submitted Gene ID	3827
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	48
Population	PGA-AFRICAN-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 3
Genotype Summary	population count: 2
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GAAGTAGAAT CTAGGGTGAA ATGAAACAAA AGTAGATGGA GAAATCTCAA CAGGACCAAG
 TAGAGAGGGA GAATTTAGGA ATTTAGTTAG ACTGCAGCAA AAGAATTCAC TGGGTCTCTG
 GCCCTAGGCT AAAAACTATA GAACTCCAAA CCTTTAATGG GAGGGGGTAC TTCATGGGGC
 ATGTCTAAGA GGAGTGAGGA ATGAGGTTAA TGTGATTCTA CGGAATTAGA CAGAAGTCTG
 TATGGCTGAA TGTAC
 Y
 GGGTTTAACA GCAACGTTTT AGTTAGTTTT TGATATTATT GCAATGATGC ACTCCAGCAG
 GAGACAAATC CTGGCAGGAT GCATGGTTCA AAGAAATACC AATCTTTCAA GAGTATGTTT
 AAACAAATTT CACTATAAAA GACTATATCT CTGGGAATGT CAAGCAATTG GTTACTTTAG
 CAGAAAAAAA AAAACTAGCC ATGTGACAAC ATGGGGATAA AGGAAAATAA ACACAGTGGA
 CATGTTATTT TTTCT

Submitted Frequency for ss7984993

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	T=0.63000000	C=0.37000000	0.466 +/-0.026	1_2004	SEQUENOM
PGA-AFRICAN-PANEL	48	T=0.62500000	C=0.37500000	0.469 +/-0.049	KNG-AFRICAN-030603	PGA-UW-FHCRC
PGA-EUROPEAN-PANEL	46	T=0.78260899	C=0.21739100	0.340 +/-0.097	KNG-EUROPEAN-030603	PGA-UW-FHCRC

dbSNP summary of Genotypes for ss7984993

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PGA-AFRICAN-PANEL	48	48	T=0.62500000	C=0.37500000	C/T=0.41666666 T/T=0.41666666 C/C=0.16666667	Pr(chiSq=0.296,df=1) =0.655	Genotype Freq.
PGA-EUROPEAN-PANEL	46	46	T=0.78260869	C=0.21739130	T/T=0.60869563 C/T=0.34782609 C/C=0.04347826	Pr(chiSq=0.011,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss7984993

There is no individual genotype data for ss7984993.

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