Submitted SNP(ss) Details: ss7987169

Submitted SNP(ss) Details: ss7987169

Submitter
Handle	IIPGA-WEISS-MARTINEZ
Submitter SNP ID	IIPGA-CARD4_3553
RefSNP(rs#)	rs5743334
Submitted Batch ID	1.27
Submitted Date	Apr 08, 2003
Publication Cited	N.D.
First entry to dbSNP	Apr 8 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_007819.10
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	METHOD-4
Ascertainment Samplesize	94
Population	N.D.

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 3
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATTTCTGGTG AATTAATTTT TGTGTTACTT TCTATGTATT GCAAAGGATA TTTTTTTTCT
 GTTTCTAATG GTGACATTAC ATTCCTTTAA AATTATTAGA
 S
 TTTTCAAAAC TCAATTGAAA GCAAAAGGTT AAGCAAATAA AGGACAGGTG TGACTCAATT
 ATGGCAAGAA CAACAAAAAA GTGACTATGG TGGGGACGTT

Submitted Frequency for ss7987169

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
D-0 - NORTH AMERICA	48	G=0.89600003	C=0.10400000	0.186 +/-0.099	G/G=0.79200000 C/G=0.20800000 C/C=0.00000000	0.208	1.27	IIPGA-WEISS-MARTINEZ
E-0 - NORTH AMERICA	40	G=0.92500001	C=0.07500000	0.139 +/-0.100	G/G=0.85000002 C/G=0.15000001 C/C=0.00000000	0.150	1.27	IIPGA-WEISS-MARTINEZ
E-1 - EUROPE	6	G=1.00000000			G/G=1.00000000		1.27	IIPGA-WEISS-MARTINEZ

dbSNP summary of Genotypes for ss7987169

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
D-0 - NORTH AMERICA	48	48	G=0.89583331	C=0.10416666	G/G=0.79166669 C/G=0.20833333	Pr(chiSq=0.064,df=1) =1.000	Genotype Freq.
E-0 - NORTH AMERICA	40	40	G=0.92500001	C=0.07500000	G/G=0.85000002 C/G=0.15000001	Pr(chiSq=0.019,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss7987169

There is no individual genotype data for ss7987169.

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