NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss7990255           
Submitter
HandleEGP_SNPS
Submitter SNP IDHGF-008958
RefSNP(rs#)rs769292
Submitted Batch IDHGF-PDR90-041003
Submitted DateApr 14, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPApr 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize164
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss7990255|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GTTGTAGTCA ATGTGATTTG ATCATAAAAT TGTAAGTTTG ACTCTAGATT TAACTCACTA
 CAAACGAAGA CTTAGCTCTC AGTTTATGGA AACATAGCTT GAGTAAGGGA GAGCGCAAAA
 ACTGCTACCT TCTAAAATCC ACAGTGGCTT TGGTTATGGA ATTTGTTTTC TCATCTGATG
 AGCAATTGAA TTTGAGTAAC TAAAATGAAA TTCAATTGGC TTTGGGTTTT AAAATATCTA
 TTCAGAGTAA CTTTT
 Y
 TTTTCCTTGC AAGAGGAATG GAGGAATTTT TAGAACAGAA TTTGGGCAGC AGCCAAAATT
 TACTTCATCT TTATTATATC ATTGCATTTA GGGATTTAAA TAAAAGGTGT TGAGAGAATT
 AGTTTAAAAA TTAGAGAGAC TGGTGTCAGC AGAGACTGTT TAAAAGAAGA GGATAGCAAT
 GGTAAAGTTT CAGGTGAAAA TTGATGGGGC AATTTAAAGA GGCATGAGGG GACTTAAATG
 GAGAGTTTCA TGTCT

  Submitted Frequency for ss7990255 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90164T=0.99390203
C=0.00609800
0.012 +/-0.017HGF-PDR90-041003EGP_SNPS


  dbSNP summary of Genotypes for ss7990255 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90164164T=0.99390244
C=0.00609756T/T=0.98780489
C/T=0.01219512
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss7990255 back to top
There is no individual genotype data for ss7990255.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement