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Submitted SNP(ss) Details: ss80753430           
Submitter
HandleKRIBB_YJKIM
Submitter SNP IDKHS1000061
RefSNP(rs#)rs6180
Submitted Batch IDKHB2007_2_AFFYMETRIX_MIP
Submitted DateNov 26, 2007
Publication Cited16376517
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFFYMETRIX_MIP
Ascertainment Samplesize174
PopulationKHP_Korean
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginA:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80753430|allelePos=51|len=101|taxid=9606|alleles='A/C'|mol=Genomic
 ACTTCCTTAT GGACAATGCC TACTTCTGTG AGGCAGATGC CAAAAAGTGC
 M
 TCCCTGTGGC TCCTCACATC AAGGTTGAAT CACACATACA GCCAAGCTTA

  Submitted Frequency for ss80753430 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
KHP1
EAST ASIA
174C=0.60919499
A=0.39080501
A/C=0.50574702
C/C=0.35632199
A/A=0.13793100
KHB2007_2_AFFYMETRIX_MIPKRIBB_YJKIM


  dbSNP summary of Genotypes for ss80753430 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
KHP_Korean
EAST ASIA
174174C=0.60919541
A=0.39080459A/C=0.50574714
C/C=0.35632184
A/A=0.13793103
Pr(chiSq=0.336,df=1)
=0.584
Genotype
Freq.

  Submitted individual genotype for ss80753430 back to top
There is no individual genotype data for ss80753430.

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