NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss82328380           
Submitter
HandleHGSV
Submitter SNP IDCor19240_DIV_20070510.chr1_43852971-43852972_1
RefSNP(rs#)rs57506461
Submitted Batch IDNA19240-Fosmids-20070510-DIPs
Submitted DateDec 02, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPDec 2 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA19240-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize71809745 470-472 41 reverse 1

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss82328380|allelePos=501|len=1001|taxid=9606|alleles='T/-'|mol=Genomic
 ATGTTGCCCA GGCTGGTCTC AAACTCCTGA ACTCAAGTGA TATGCCCACC TTAGCCTCCC
 AAAGTATTGG GATTACAGGC GTGAGCCACC GTGCCTGGCC TGTATTTTCT AATGATGTAT
 TTTACACATA CAAGAACAGA ACAAATAATT ATACCTATCA TGAATTTTTT TTTTTTTTAA
 ATGAGACGGA GTTTCACTCT TGTTGCCCAG GCTAGAGTGC AATGGCATGA CCTTGGCTTA
 CTGCAACCTC CACCTCCCGG GTTCAAGCGA TTCTCCTGCC TCAGCCTCCC GAGTAGCTGG
 GGTTACAGGC ATGTGCCACC ACACCCGGCT AATTTTTGTA TTTTTAGTAG AGACAGGGTT
 TCTCCATGTT GATCAGGCTG GTCTTGAACT CTTGACCTCA GGTGATCTGC CTGCCTTGGC
 CTCCCAAAGT GTTGGGATTA GAGGCGTGAA CCACCACGCC CGGCTCTATC ATTAAATCTT
 TTTTTTTTTT TTTTTTTTTT
 N
 GAGGCAGAGT CTTGCTCTGT CGCCCAGGCT GGAGTGCAGT GGCGCGATCT TGGCTCACTG
 CAAGCTATCC CTCCCTGGTT CACGCCATTC TCCTGCCTCA GCCTCCCGAG TAGCTGGGAC
 TATAGGCGCC CGCCACCATG CCCAGCTAAT TTTTTGTATT TTTAGTAGAG ATGGGGTTTC
 ACTGTGTTAG CCAGGATGGT CTCGATCTCC CGATCTCATG ATCCGCCCGC CTCGGCCTCT
 CAAAGTGCTG GGATTACAGG CGTGAGCCAC TGCGCCTGTC TATCATTAAA TCTTAATATG
 CCATCTTGCT TGAGTTTTTT TTTATTTTTT AAATAAAGAG AACATTACAT TTTTACTGAA
 AGCCTTCCTA ATGTGTTTTT CCCTTCTTCT CCCTCCTTCA ACAGAAAAAA GCCACTGTTT
 GAGTTAAAGG TGTTTAAAGT TCCCATACGT GTTTTTATCC TTCTGCTACA TCTTTTTTTT
 TTTTTTTTTT TTTTTTTTAG

  Submitted Frequency for ss82328380 back to top
There is no frequency submission for ss82328380.


  dbSNP summary of Genotypes for ss82328380 back to top
No sufficient data to compute Hardy-weinberg probability for ss82328380.


  Submitted individual genotype for ss82328380 back to top
There is no individual genotype data for ss82328380.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement