NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss82328399           
Submitter
HandleHGSV
Submitter SNP IDCor19240_DIV_20070510.chr6_34065285-34065286_1
RefSNP(rs#)rs57445354
Submitted Batch IDNA19240-Fosmids-20070510-DIPs
Submitted DateDec 02, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPDec 2 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA19240-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleTCTCTC/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize71809782 345-352 59 reverse 6

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss82328399|allelePos=442|len=942|taxid=9606|alleles='TCTCTC/-'|mol=Genomic
 TGTCTACCAA CAGAAGCACT AGCAGCTCAG ACCAACTCTG CTTTGCTAAG GTCTGGGGTG
 GGGGTGCCAG GCACAGGGCC AGACCATGGG AGCACCCTGC CCTAAGAGCC CAGGAATACA
 GGGAAGAGAA GCAGTCACAC CATGGCTGAG GAAGGGCTCA ATATGTCCCT GTGCCCCATA
 TATCATCCTT CCCACTTTAC AGGTGAGGAA ACTGAGGCTG GCAAGGCTAA GGGCCTGACC
 TGCAGTGACA CAGCCAGTGA GTATCTGGGC CGGACTGAAC TCGAGACCTT TTTCATGACC
 TTGGGAAGGA CATAGCTGCA GAGCCTGGGA CACTCTGGAG GCAGCCAGGC CTGGACTCCA
 CCCTCGTCTG AGCTATGTGG CCATGGAAGT GTCTGCTAAC ACCTCTGGGC CTCCGTTTCT
 CTCTCTCTCT CTCTCTCTCT C
 N
 GCTTGCTCGC TCTCTCTCTT TTGTTTTATT TTTGAGGCAG GGTTTTGCTG TGTTTCCCAG
 GCTAGAGTGC AGTGGCCCAG TCAAGGCTCA CTGCAGCCTC TACCTCCTCA GCTCAAGTGA
 TCCTCCCACC TCAGCCTCCT GAGTAGCTGA GACTATAGGT GTGCGCCACC ATGCCTGGAT
 AATTTTTTGT ATTTTTTGTA GAGACAGGGT GTCACTATGT TGCCCAGGCT GGTCTCAATC
 TCCTGGGCTC GAGCGATCCT CCTGCCTTGG TTTCCCAAAG TACTGAGATT ACAGGCGTGA
 GCCACTGTTC CTGGCCCCCT CATTTGCTTC ATCTGTAAAA TGGGGACAAA CAAGCCCCAC
 CTCAGACAAA TATAATGAGA GCATCTGTCA TCTGATAGGT ATTGAGAAAG CAGTAGCTCT
 ATTATTATTA TTATTACTAC TACTACGACT AAAGTTATTA TTGTTGCCAG TCTAATGACA
 GCCCCAAATC CAAGGATGGT

  Submitted Frequency for ss82328399 back to top
There is no frequency submission for ss82328399.


  dbSNP summary of Genotypes for ss82328399 back to top
No sufficient data to compute Hardy-weinberg probability for ss82328399.


  Submitted individual genotype for ss82328399 back to top
There is no individual genotype data for ss82328399.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement