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Submitted SNP(ss) Details: ss8339340           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011387.8_11112703
RefSNP(rs#)rs6033053
Submitted Batch IDCHR13_NA17119_extra
Submitted DateNov 12, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR13_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:Chr_13_17119_2-232d18.q1kposition:357quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8339340|allelePos=736|len=1154|taxid=9606|alleles='C/G'|mol=Genomic
 TTGCAACAAT TTAGCTAATA GAAAAGACAG AAAAGGGCCA GACATGGTGG TCCACTCCTG
 TAATCCTAGC ACTTTGGGAG GCCAAGGTGG GCAGATCACC CGAGGTCGGG AGTTGGAGAT
 CAGCCTGACC AACATGGCAA AACTCCATCT CTACTAAAAA TAAAAAAACT AGCCCGGTGT
 GGTGGCAGGA GCCTGTAATC CCAGCTACTC AGGAGGCTGA GGCAGGAGAA ATGAACCTGG
 GAGGCAGAGG TTGCAGTGAG CCAAGATGGT GCCATTGCAC TCCAGCCTGG GTGACAAGAA
 CAAAACTCCT TCACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACGA
 CAGAAAAGGG GAAATTGCAA CTGGGCATTT ATTACAGGAT TAGCTACTCT CATCTATTAC
 TTGGATGGAG AGAAATAAAT AGATTTCAGG TTTGTTTTGG GAAGAGAATC CATAGAATTC
 ACTGGTAAAC TAGATGTGGA GTATAAGAAA AGAGCCCTCA AGCATAGTTA GCAGTTTTCT
 AACTACATCG ACTGTGAAAG ACGTGGAAGT ATTTTTCTCA GATGGGGAAG ATGTGGACAA
 AAAAAAGCAG TGAGAGAAGA GAATGTTGGA CACTGAAGGT TTTTGAGGGA CAAATAGAGA
 TATCAGGAAT CAATTGTGAG GTCCAAATGT TAGGTATTGG CTAAAGACAT AAATTTGAAG
 AACTGAGCAT TTAGA
 S
 CAGGGGTTAG CAAACCCTTG CATGTGGGCC AAATCTAATC ACTGTTTGTT GCCTTATGGC
 TGTGTGAATG CTTTCCATGT TTAAATGGTT GGAAAAAAAT TAAAACAAAA AAATTATGAT
 ATATGAAAAT TATATGAAAC TTAAATTTTA GTGTCCATAA ATGAAGCTTT ATTGGAACAC
 AGCCAATATA TTTGTTGATA TATTATCTAT GGCTACTTTT ATACTACAAA GGCAGAGTAG
 AGTAACTGTG ATAGAGACCA TATGCCCTGC AAAGTCAAAA ATATTTACTA TACAGCTATT
 TATAGAAAGA CTTTGCCTAT TATTAATTTA GATGATATTA AACCTAAGGG ATTGGACTGT
 ACAAATCCTA GAAAGTTTTG CTTTGTCTTT GCGTCCAGCA AGCCTGATGT CCTGGAAA

  Submitted Frequency for ss8339340 back to top
There is no frequency submission for ss8339340.


  dbSNP summary of Genotypes for ss8339340 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU112112G=0.54464287
C=0.45535713C/G=0.44642857
G/G=0.32142857
C/C=0.23214285
Pr(chiSq=0.560,df=1)
=0.479		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		7474C=0.54054052
G=0.45945945C/G=0.70270270
C/C=0.18918920
G/G=0.10810811
Pr(chiSq=6.363,df=1)
=0.020		Genotype
Freq.
HapMap-JPT8282C=0.53658539
G=0.46341464C/G=0.39024389
C/C=0.34146342
G/G=0.26829270
Pr(chiSq=1.901,df=1)
=0.200		Genotype
Freq.
HapMap-YRI110110C=0.69090909
G=0.30909091C/G=0.50909090
C/C=0.43636364
G/G=0.05454545
Pr(chiSq=2.026,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss8339340 back to top
There is no individual genotype data for ss8339340.

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