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Submitted SNP(ss) Details: ss8485049           
Submitter
HandleEGP_SNPS
Submitter SNP IDBNIP2-000315
RefSNP(rs#)rs2306359
Submitted Batch IDBNIP2-PDR90-041703
Submitted DateApr 18, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPApr 18 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8485049|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GCCACCAATA AGGAGTCGAC GCGACGGGTC CGCCCACAGG CAAGGAAGGC CGACCCCGCG
 AGTGCAGGCG CGAGCGCTAG CCCGTGACGT CTGAGGGGGT TGGGGGGATG CTGTGTGGGT
 TTCAAGAAGA CGCCAcgcct ccgccgccgc cacgcccccg ccgcctccac cgccggctgc
 cgcGCCCGGA GGAGGTCGGG ATGTTATCAC TTCCGCCGGG GCTTCTCACT GTGTCCGGGT
 CAGCTGCTGC CGCCG
 M
 CGCCGTACCG CTGCGGCCGG GGGATTGGGC CGGGGTCTCC ACCGCCGACC GAGGGGAGCG
 GGCTCCGCTC GGCCCTGCTT TTTGCGACCT GGCCGTCAGC CCCACGTCGC CGGCCTGGAG
 GGGCGAAGAG GACGAGGGGG CCAAGGCTTC CTCCGGGGTG AGTGCGGCCT GGGAGAACTC
 GGCACGGTGG CTCCGGAGCT GGACTGGGAA CCGGCCTAGG GGCGAAAGTC TGTCGGGCGC
 GTGCCCACGA CGTCC

  Submitted Frequency for ss8485049 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90174A=0.83333302
C=0.16666700
0.278 +/-0.053BNIP2-PDR90-041703EGP_SNPS


  dbSNP summary of Genotypes for ss8485049 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90174174A=0.83333331
C=0.16666667A/A=0.70114940
A/C=0.26436782
C/C=0.03448276
Pr(chiSq=0.203,df=1)
=0.655		Genotype
Freq.

  Submitted individual genotype for ss8485049 back to top
There is no individual genotype data for ss8485049.

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