NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss86214168           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDNRAS-002350
RefSNP(rs#)rs9724617
Submitted Batch IDNRAS-PGA_CEPH-121107
Submitted DateDec 12, 2007
Publication CitedN.D.
First entry to dbSNPDec 12 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86214168|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 CGCTCCTTGG TGGGGGCTGT TCATGGCGGT TCCGGGGTCT CCAACATTTT TCCCGGCTGT
 GGTCCTAAAT CTGTCCAAAG CAGAGGCAGT GGAGCTTGAG GTAAGTTTAT CTCATGCATA
 GTGTTCGGCT TTGGGCTGTG GAATGTTCAG GCGTTTCACT GATGCCAGAA ATGGAGCAGA
 ATCTATCAGC TGGAGACAAA GGCCTTGGGC GGGGGTCCTT CCATTTGGTG CCTACGTGGG
 GAGATCTTTG GAGAC
 M
 GAAGGGAGAA TGGGAAGGAG TTGCGGCCTG GAGGCTTCCT GCTAGAGCTG AGAAGCCTTC
 GGGGAGTAAT AGGAAGGGGG ATTTCCATTG CTTAGGCTGA GGGCGGGGCC CAAGGACTGT
 TGAAAAATAG CTAAGGATGG GGGTTGCTAG AAAACTACTC CAGAAGTGTG AGGCCGATAT
 TAATCCGGTG TTTTTGCGTT CTCTAGTCAC TTTAAGAACC AAATGGAAGG TCACACTAGG
 GTTTTCATTT CCATT

  Submitted Frequency for ss86214168 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_YORUB-PANEL48A=0.93750000
C=0.06250000
NRAS-PGA_YORUB-121107PGA-UW-FHCRC
PGA_CEPH-PANEL46A=1.00000000
C=0.00000000
NRAS-PGA_CEPH-121107PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss86214168 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_YORUB-PANEL4848A=0.93750000
C=0.06250000A/A=0.87500000
A/C=0.12500000
Pr(chiSq=0.013,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss86214168 back to top
There is no individual genotype data for ss86214168.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement