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Submitted SNP(ss) Details: ss86214371           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDMAPK14-000323
RefSNP(rs#)rs146680189
Submitted Batch IDMAPK14-PGA_YORUB-121107
Submitted DateDec 12, 2007
Publication CitedN.D.
First entry to dbSNPDec 12 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_YORUB-PANEL
Allele
Observed Allele-/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86214371|allelePos=256|len=511|taxid=9606|alleles='-/C'|mol=Genomic
 ACTGTACCAC TTGAAATCAT GGTCACTGTT CATAATTTTT TCAACAAATA TTTATGACAC
 ATGTTTTATG TTCTAGACAT TGTGCTAGAT GTTGGGACAA GATATGCAAA GTCTGAGCCC
 TCCAAGGTGT GTATGACACA AAATAGAATA ATCACGGGAA ATGTTGAGAA ATGTCCTGGC
 TTGGATCTAG TTATTTCTAA TACAAGAAAC TAAGAGAATG AGACAGGATC TGATTCTTCT
 GCTCATTGTA ACAAG
 N
 TTTAGCATAG GCATAGGTTG ATAATGGATG TAGGCATGGG GTTAGAATGC CTTGCCCATT
 CACATTTATC TTGTTTGGTT TTTACAAATG ACTCTGTTAG TCGGGAATGC AGGGCAGGAA
 TTCTCTCGTA GAAGCTGGAA CTGAGGTTCA GGAAAGGTCA GTTGACTTGC CTAAATTCGA
 TGAGACTCCT GCCCTATTCT CCTTACTCGA AGAGGCCTGA GTTAAATGCT TAAAATCCTC
 TTCACTGATG GCTCT

  Submitted Frequency for ss86214371 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_CEPH-PANEL46C=0.89130402
-=0.10869600
MAPK14-PGA_CEPH-121107PGA-UW-FHCRC
PGA_YORUB-PANEL46C=0.89130402
-=0.10869600
MAPK14-PGA_YORUB-121107PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss86214371 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_CEPH-PANEL4646C=0.89130437
-=0.10869565C/C=0.78260869
-/C=0.21739130
Pr(chiSq=0.070,df=1)
=1.000		Genotype
Freq.
PGA_YORUB-PANEL4646C=0.89130437
-=0.10869565C/C=0.78260869
-/C=0.21739130
Pr(chiSq=0.070,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss86214371 back to top
There is no individual genotype data for ss86214371.

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