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Submitted SNP(ss) Details: ss86214395           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDMAPK14-047635
RefSNP(rs#)rs7738653
Submitted Batch IDMAPK14-PGA_YORUB-121107
Submitted DateDec 12, 2007
Publication CitedN.D.
First entry to dbSNPDec 12 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPGA_YORUB-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86214395|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GCCAATCATG TTTCTTTTGT ATTTCCCAAG CCCTGGATTA TTTTAAAGCA AGTCTAGACA
 TTATATAATA CCATCCATAG ATACTTCAGT TTGCATATCT GAAAGATAAG GACTCTTCAT
 TCTTACATCT AAACAATAAT TTATTGATGT AATCTAATAT CTGGTCAGCG TAATGTTGAG
 ATTTTCAAAA AATCCTCAAG AAAGACTAAT TTATTTGTTG GAGGGGCAGA TAAACAGTGT
 TTTAAAATTA AACCC
 R
 TCTTTGATAT TTAGCTGCTT TGAGTCCTTA TTGAGCTCCA GAGTGCCAAC CAGAAAATAG
 ATTAAAAGCT CAACTGAGTG GAGTCAATGG CTGTGGAAAT TATAGTAATG GTAAATGTAC
 ACAATACTGA TAGTTACTTA TGCTGATTTC TAATCTTACT ATTAACACTA GCAGTTCTTA
 CTGATTCATG AAAATGTGCA GCAAATATGT TATATAATAT GACAATAGAA GGTTGGAGGT
 AACTTTGACT TTTTT

  Submitted Frequency for ss86214395 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_CEPH-PANEL46A=1.00000000
G=0.00000000
MAPK14-PGA_CEPH-121107PGA-UW-FHCRC
PGA_YORUB-PANEL48A=0.97916698
G=0.02083300
MAPK14-PGA_YORUB-121107PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss86214395 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_YORUB-PANEL4848A=0.97916669
G=0.02083333A/A=0.95833331
A/G=0.04166667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss86214395 back to top
There is no individual genotype data for ss86214395.

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