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Submitted SNP(ss) Details: ss86215226           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDPRKCE-192732
RefSNP(rs#)rs58838649
Submitted Batch IDPRKCE-PGA_CEPH-121107
Submitted DateDec 12, 2007
Publication CitedN.D.
First entry to dbSNPDec 12 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize42
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86215226|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CTCTTTGCTG GGGACAGTGA AAAAGGAAAA GGAGGGGGAT AGTGGTTCCT GCCCTCAAGA
 TATTCACAGC TTGTTGGGGA GAGAGCCTGG CACTATGAAC CAATGAAAGC TCTGTGTAGA
 CAGATGGGAT TGTGGAGGCG GAGAGGCTAG CAGGGGGACT TGGTGATCCA GGGTTTCCAG
 AGTTACTACT CTCTCTTATA GAGAGAACAC AGTTTCTGTA AGGATAGTTC AGTCCTTGCA
 AAGATGTCTT TAACT
 R
 CAAGAGGCCC AGCCCTCTGG TTTTTGTCTC ACCCAATTAT TTCACCACCT TGTCTCTGTA
 TATTATAAGT AGTTAGCTGG ATTTGAGGTG GGGAGGGAGG AAGTGAGGGT GCCTGTGCTG
 TTTCTTACGC CTTGCATACC TTCCCTTCCC TCTTCCCTTC CGTCTTCTAC ACTGATTTCA
 GGTTCGTCAG ATACTTTATC AGTTCTTCTC TGTCATTCAT CATTAAGCTG GATTCAGCAT
 TGTTCCCCAT TTTTT

  Submitted Frequency for ss86215226 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_YORUB-PANEL46A=0.80434799
G=0.19565199
PRKCE-PGA_YORUB-121107PGA-UW-FHCRC
PGA_CEPH-PANEL42A=0.83333302
G=0.16666700
PRKCE-PGA_CEPH-121107PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss86215226 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_CEPH-PANEL4242A=0.83333331
G=0.16666667A/A=0.66666669
A/G=0.33333334
Pr(chiSq=0.257,df=1)
=0.655		Genotype
Freq.
PGA_YORUB-PANEL4646A=0.80434781
G=0.19565217A/A=0.60869563
A/G=0.39130434
Pr(chiSq=0.480,df=1)
=0.527		Genotype
Freq.

  Submitted individual genotype for ss86215226 back to top
There is no individual genotype data for ss86215226.

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