NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss87157           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0100206
RefSNP(rs#)rs739330
Submitted Batch IDTSC-SANGER-19-25-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-25
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss87157|allelePos=190|len=673|taxid=9606|alleles='C/T'|mol=Genomic
 GACACATGCC CTGGGAGCTC CTCCCAGACA GTGATTACAT ACAGTGGAGA TTCTAAGGCA
 TGTCTGCTGC TGGGACACAG GAGTGATCCC TGATGGGTGG GTTTGGCCCA GGAAGGCATC
 AATGGCTTTA CTAGGCTTAG AGAGGGCCAT GGCATAATTA GGAGGTTTTA TCAGTGTTCC
 CTGATTTTT
 Y
 ATGTCTTTGT TGTCAGATGT GCATCCACGT CGCACAGTTT CCACAGCCTC CCTGGCCTCC
 TGTGACATCT TCTGCCTCAA TTAATGATGT ATTCTTCAGG GGTATATGAG AATTTTTTTT
 TCTAGTAGTA ATCTTTTCCA ATCCAGAGGC CTCAGTGGTA GGCAGAGAAC CATAAATATA
 GAGAGGCTCC CAGGAGAACG CATTTGATGC AGAAGAAGCC ACAGAACCTG ACAGGAAAGC
 AGCCCTTGAA CTCCACCTGC CCCTGCCCTG GGCTGCTCCT GTCTTCTGTG GGTGCTGAGT
 GCCCCCTTCA GCCAAGCCAC CCCCTGTGTC CTGCATGGCA GTCTGTCTTT GAGCCCACGT
 GGACTTCCCA TCACGATGTT TCCTGCACAG TTAAATGCTG CCATGTTCTG GGTTCTCAGG
 CTGTTCATTT GCATGTACAG CATGTACTTT GGTGTTGTCT CTTGAAGTGG TGAGTCTGCC
 CCT

  Submitted Frequency for ss87157 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184C=0.62000000
T=0.38000000
0.471 +/-0.0241_2004SEQUENOM


  dbSNP summary of Genotypes for ss87157 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU114114C=0.69298244
T=0.30701753C/C=0.52631581
C/T=0.33333334
T/T=0.14035088
Pr(chiSq=2.675,df=1)
=0.150
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.64444447
T=0.35555556C/T=0.48888889
C/C=0.40000001
T/T=0.11111111
Pr(chiSq=0.201,df=1)
=0.655
Genotype
Freq.
HapMap-JPT9090C=0.58888888
T=0.41111112C/C=0.40000001
C/T=0.37777779
T/T=0.22222222
Pr(chiSq=2.174,df=1)
=0.150
Genotype
Freq.
HapMap-YRI120120C=0.84166664
T=0.15833333C/C=0.71666664
C/T=0.25000000
T/T=0.03333334
Pr(chiSq=0.231,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss87157 back to top
There is no individual genotype data for ss87157.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement